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  5. Sro9_g007550.1

Sro9_g007550.1 (Contig4120.g31523)


Aliases : Contig4120.g31523

Description : mRNA-processing factor 17


Gene families : OG_01_0002214 (OrthoFinder) Phylogenetic Tree(s): OG0002214_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro9_g007550.1
Cluster HCCA: Cluster_149

Target Alias Description ECC score Gene Family Method Actions
Cre04.g226450 30791065, PRP17 RNA processing.RNA splicing.spliceosome-associated... 0.01 OrthoFinder
Dusal.0324s00009.1 33186994 WD40 repeat [Interproscan]. 0.01 OrthoFinder
TP04G00510.1 No alias WD40 repeat [Interproscan]. 0.02 OrthoFinder
XM_003055055.1 MicpuC2_50511, 50511 Anaphase-promoting complex subunit 4, WD40 domain; WD40... 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity IEP Enrichment
BP GO:0000375 RNA splicing, via transesterification reactions IEP Enrichment
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Enrichment
BP GO:0000398 mRNA splicing, via spliceosome IEP Enrichment
BP GO:0001932 regulation of protein phosphorylation IEP Enrichment
MF GO:0003682 chromatin binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0004843 thiol-dependent deubiquitinase IEP Enrichment
MF GO:0005216 ion channel activity IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005681 spliceosomal complex IEP Enrichment
CC GO:0005956 protein kinase CK2 complex IEP Enrichment
CC GO:0005963 magnesium-dependent protein serine/threonine phosphatase complex IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006397 mRNA processing IEP Enrichment
BP GO:0006464 cellular protein modification process IEP Enrichment
BP GO:0006473 protein acetylation IEP Enrichment
BP GO:0006474 N-terminal protein amino acid acetylation IEP Enrichment
BP GO:0006650 glycerophospholipid metabolic process IEP Enrichment
MF GO:0008242 omega peptidase activity IEP Enrichment
MF GO:0008270 zinc ion binding IEP Enrichment
CC GO:0008287 protein serine/threonine phosphatase complex IEP Enrichment
BP GO:0008380 RNA splicing IEP Enrichment
MF GO:0008417 fucosyltransferase activity IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
MF GO:0015267 channel activity IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016071 mRNA metabolic process IEP Enrichment
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP Enrichment
BP GO:0016579 protein deubiquitination IEP Enrichment
BP GO:0017196 N-terminal peptidyl-methionine acetylation IEP Enrichment
BP GO:0018206 peptidyl-methionine modification IEP Enrichment
MF GO:0019207 kinase regulator activity IEP Enrichment
BP GO:0019220 regulation of phosphate metabolic process IEP Enrichment
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Enrichment
MF GO:0019887 protein kinase regulator activity IEP Enrichment
MF GO:0019888 protein phosphatase regulator activity IEP Enrichment
MF GO:0019899 enzyme binding IEP Enrichment
MF GO:0019900 kinase binding IEP Enrichment
MF GO:0019901 protein kinase binding IEP Enrichment
MF GO:0022803 passive transmembrane transporter activity IEP Enrichment
CC GO:0030289 protein phosphatase 4 complex IEP Enrichment
CC GO:0031248 protein acetyltransferase complex IEP Enrichment
BP GO:0031365 N-terminal protein amino acid modification IEP Enrichment
BP GO:0031399 regulation of protein modification process IEP Enrichment
CC GO:0031414 N-terminal protein acetyltransferase complex IEP Enrichment
CC GO:0031417 NatC complex IEP Enrichment
BP GO:0032268 regulation of cellular protein metabolic process IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
BP GO:0036211 protein modification process IEP Enrichment
BP GO:0042325 regulation of phosphorylation IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043169 cation binding IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
BP GO:0043412 macromolecule modification IEP Enrichment
BP GO:0043543 protein acylation IEP Enrichment
BP GO:0043549 regulation of kinase activity IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0044267 cellular protein metabolic process IEP Enrichment
BP GO:0045859 regulation of protein kinase activity IEP Enrichment
BP GO:0046486 glycerolipid metabolic process IEP Enrichment
BP GO:0046488 phosphatidylinositol metabolic process IEP Enrichment
MF GO:0046872 metal ion binding IEP Enrichment
BP GO:0050790 regulation of catalytic activity IEP Enrichment
BP GO:0051174 regulation of phosphorus metabolic process IEP Enrichment
BP GO:0051246 regulation of protein metabolic process IEP Enrichment
BP GO:0051338 regulation of transferase activity IEP Enrichment
BP GO:0051726 regulation of cell cycle IEP Enrichment
BP GO:0065009 regulation of molecular function IEP Enrichment
MF GO:0070403 NAD+ binding IEP Enrichment
BP GO:0070646 protein modification by small protein removal IEP Enrichment
BP GO:0070647 protein modification by small protein conjugation or removal IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
BP GO:0071900 regulation of protein serine/threonine kinase activity IEP Enrichment
MF GO:0101005 deubiquitinase activity IEP Enrichment
CC GO:0140513 nuclear protein-containing complex IEP Enrichment
CC GO:0140535 intracellular protein-containing complex IEP Enrichment
CC GO:1902493 acetyltransferase complex IEP Enrichment
CC GO:1902494 catalytic complex IEP Enrichment
CC GO:1903293 phosphatase complex IEP Enrichment
BP GO:1904029 regulation of cyclin-dependent protein kinase activity IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR001680 WD40_repeat 591 627
IPR001680 WD40_repeat 329 367
IPR001680 WD40_repeat 457 493
IPR001680 WD40_repeat 372 409
IPR001680 WD40_repeat 548 584
No external refs found!