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  5. Sro98_g050410.1

Sro98_g050410.1 (Contig3362.g26333)


Aliases : Contig3362.g26333

Description : Chloroplastic


Gene families : OG_01_0000013 (OrthoFinder) Phylogenetic Tree(s): OG0000013_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro98_g050410.1
Cluster HCCA: Cluster_108

Target Alias Description ECC score Gene Family Method Actions
Cre01.g066917 30788321, LHCBM1 Photosynthesis.photophosphorylation.photosystem... 0.01 OrthoFinder
Cre06.g278213 30779171, LHCA6 Chlorophyll a-b binding protein P4, chloroplastic... 0.02 OrthoFinder
Cre06.g284250 30779962, LHCBM8 Photosynthesis.photophosphorylation.photosystem... 0.02 OrthoFinder
Cre10.g425900 30790196, LHCA5 Chlorophyll a-b binding protein 4, chloroplastic... 0.02 OrthoFinder
Cre10.g452050 30790835, LHCA4 Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.02 OrthoFinder
Cre12.g548400 30793460, LHCBM2 Photosynthesis.photophosphorylation.photosystem... 0.01 OrthoFinder
Cre16.g673650 30777655, LHCB5 Photosynthesis.photophosphorylation.photosystem... 0.02 OrthoFinder
Cre17.g720250 30782643, LHCB4 Photosynthesis.photophosphorylation.photosystem... 0.02 OrthoFinder
Cz01g23030.t1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.02 OrthoFinder
Cz03g26240.t1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.02 OrthoFinder
Cz04g04130.t1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.03 OrthoFinder
Cz04g09210.t1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.02 OrthoFinder
Cz08g11160.t1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.02 OrthoFinder
Cz09g32070.t1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.02 OrthoFinder
Cz10g10160.t1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.03 OrthoFinder
Cz12g16070.t1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.02 OrthoFinder
Cz13g03240.t1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.02 OrthoFinder
Cz15g09060.t1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.02 OrthoFinder
Cz16g14150.t1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.02 OrthoFinder
Dusal.0017s00032.1 33200485 Chlorophyll A-B binding protein [Interproscan]. 0.02 OrthoFinder
Dusal.0027s00004.1 33191535 Chlorophyll A-B binding protein [Interproscan]. 0.02 OrthoFinder
Dusal.0081s00007.1 33198263 Chlorophyll A-B binding protein [Interproscan]. 0.03 OrthoFinder
OT_03G04590.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.02 OrthoFinder
OT_03G04600.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.02 OrthoFinder
PTI_17G00760.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.21 OrthoFinder
PTI_20G01950.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.14 OrthoFinder
TP02G05660.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.29 OrthoFinder
TP03G07570.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.27 OrthoFinder
TP03G07580.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.29 OrthoFinder
Transcript_contig_59040 59040 Chlorophyll A-B binding protein [Interproscan]. 0.02 OrthoFinder
Transcript_contig_79146 79146 Chlorophyll A-B binding protein [Interproscan]. 0.02 OrthoFinder
Transcript_contig_79793 79793 Chlorophyll A-B binding protein [Interproscan]. 0.02 OrthoFinder
Transcript_contig_90701 90701 Chlorophyll A-B binding protein [Interproscan]. 0.01 OrthoFinder
UNPLg00080.t1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.02 OrthoFinder
Vocar.0001s0479.1 32885541 Chlorophyll A-B binding protein [Interproscan]. 0.02 OrthoFinder
Vocar.0002s0052.1 32890630 Chlorophyll A-B binding protein [Interproscan]. 0.01 OrthoFinder
Vocar.0002s0054.1 32891060 Chlorophyll A-B binding protein [Interproscan]. 0.03 OrthoFinder
Vocar.0002s0055.1 32891143 Chlorophyll A-B binding protein [Interproscan]. 0.02 OrthoFinder
Vocar.0002s0071.1 32890569 Chlorophyll A-B binding protein [Interproscan]. 0.02 OrthoFinder
Vocar.0002s0281.1 32890560 Chlorophyll A-B binding protein [Interproscan]. 0.03 OrthoFinder
Vocar.0002s0333.1 32890723 Chlorophyll A-B binding protein [Interproscan]. 0.01 OrthoFinder
Vocar.0005s0361.1 32883819 Chlorophyll A-B binding protein [Interproscan]. 0.01 OrthoFinder
Vocar.0007s0216.1 32888272 Chlorophyll A-B binding protein [Interproscan]. 0.02 OrthoFinder
Vocar.0009s0370.1 32893259 Chlorophyll A-B binding protein [Interproscan]. 0.01 OrthoFinder
Vocar.0012s0172.1 32895002 Chlorophyll A-B binding protein [Interproscan]. 0.04 OrthoFinder
Vocar.0014s0016.1 32888452 Chlorophyll A-B binding protein [Interproscan]. 0.03 OrthoFinder
Vocar.0018s0037.1 32898532 Chlorophyll A-B binding protein [Interproscan]. 0.02 OrthoFinder
Vocar.0021s0124.1 32896004 Chlorophyll A-B binding protein [Interproscan]. 0.01 OrthoFinder
Vocar.0023s0180.1 32883354 Chlorophyll A-B binding protein [Interproscan]. 0.03 OrthoFinder
Vocar.0028s0157.1 32895586 Chlorophyll A-B binding protein [Interproscan]. 0.01 OrthoFinder
XM_002505496.1 MICPUN_95759, 95759 Chlorophyll a/b-binding protein CP26, chloroplast... 0.02 OrthoFinder
XM_002506245.1 MICPUN_92498, 92498 Chlorophyll a/b-binding protein CP29, chloroplast... 0.02 OrthoFinder
XM_003054893.1 MicpuC2_45156, 45156 Prasinophyte specific chlorophyll a/b-binding protein,... 0.03 OrthoFinder
XM_003055426.1 MicpuC2_46212, 46212 Prasinophyte specific chlorophyll a/b-binding protein (LHCP2.7) 0.02 OrthoFinder
XM_003056382.1 MicpuC2_70884, 70884 Chlorophyll a/b-binding protein, chloroplast precursor (LHCA2) 0.02 OrthoFinder
XM_003057791.1 MicpuC2_57460, 57460 Prasinophyte specific chlorophyll a/b-binding protein,... 0.02 OrthoFinder
lcl|BLLF01000146.1_cds_GFH08210.1_2687 HaLaN_03140, GFH08210 Chlorophyll a-b binding protein, chloroplastic 0.01 OrthoFinder
lcl|BLLF01000182.1_cds_GFH08749.1_3226 HaLaN_03767, GFH08749 Chlorophyll a-b binding protein, chloroplastic 0.01 OrthoFinder
lcl|BLLF01000238.1_cds_GFH09479.1_3956 HaLaN_04631, GFH09479 Chlorophyll a-b binding protein, chloroplastic 0.03 OrthoFinder
lcl|BLLF01000626.1_cds_GFH13553.1_8030 HaLaN_09459, GFH13553 Chlorophyll a-b binding protein, chloroplastic 0.02 OrthoFinder
lcl|BLLF01000682.1_cds_GFH14061.1_8538 HaLaN_10037, GFH14061 Chlorophyll a-b binding protein, chloroplastic 0.03 OrthoFinder
lcl|BLLF01000742.1_cds_GFH14568.1_9045 HaLaN_10649, GFH14568 Chlorophyll a-b binding protein, chloroplastic 0.01 OrthoFinder
lcl|BLLF01000956.1_cds_GFH16169.1_10646 HaLaN_12540, GFH16169 Chlorophyll a-b binding protein, chloroplastic 0.01 OrthoFinder
lcl|BLLF01001126.1_cds_GFH17296.1_11773 HaLaN_13902, GFH17296 Chlorophyll a-b binding protein, chloroplastic 0.01 OrthoFinder
lcl|BLLF01001360.1_cds_GFH18804.1_13281 HaLaN_15665, GFH18804 Chlorophyll a-b binding protein, chloroplastic 0.01 OrthoFinder
lcl|BLLF01001656.1_cds_GFH20549.1_15026 HaLaN_17690, GFH20549 Chlorophyll a-b binding protein, chloroplastic 0.01 OrthoFinder
lcl|BLLF01001849.1_cds_GFH21535.1_16012 HaLaN_18860, GFH21535 Chlorophyll a-b binding protein, chloroplastic 0.01 OrthoFinder
lcl|BLLF01002251.1_cds_GFH23349.1_17826 HaLaN_20950, GFH23349 Chlorophyll a-b binding protein, chloroplastic 0.01 OrthoFinder
lcl|BLLF01005029.1_cds_GFH30626.1_25103 HaLaN_29513, GFH30626 Chlorophyll a-b binding protein, chloroplastic 0.01 OrthoFinder
lcl|BLLF01007274.1_cds_GFH32872.1_27349 HaLaN_32161, GFH32872 Chlorophyll a-b binding protein, chloroplastic 0.01 OrthoFinder
lcl|LHPG02000003.1_cds_PRW60030.1_6172 PRW60030 Chlorophyll a-b binding of LHCII type chloroplastic 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004427 inorganic diphosphatase activity IEP Enrichment
MF GO:0008942 nitrite reductase [NAD(P)H] activity IEP Enrichment
MF GO:0009055 electron transfer activity IEP Enrichment
CC GO:0009521 photosystem IEP Enrichment
CC GO:0009523 photosystem II IEP Enrichment
CC GO:0009654 photosystem II oxygen evolving complex IEP Enrichment
MF GO:0009678 pyrophosphate hydrolysis-driven proton transmembrane transporter activity IEP Enrichment
BP GO:0010109 regulation of photosynthesis IEP Enrichment
BP GO:0010207 photosystem II assembly IEP Enrichment
MF GO:0010242 oxygen evolving activity IEP Enrichment
BP GO:0015979 photosynthesis IEP Enrichment
MF GO:0016661 oxidoreductase activity, acting on other nitrogenous compounds as donors IEP Enrichment
BP GO:0019684 photosynthesis, light reaction IEP Enrichment
BP GO:0019725 cellular homeostasis IEP Enrichment
CC GO:0019898 extrinsic component of membrane IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
BP GO:0042548 regulation of photosynthesis, light reaction IEP Enrichment
BP GO:0042549 photosystem II stabilization IEP Enrichment
BP GO:0043467 regulation of generation of precursor metabolites and energy IEP Enrichment
BP GO:0045454 cell redox homeostasis IEP Enrichment
MF GO:0046857 oxidoreductase activity, acting on other nitrogenous compounds as donors, with NAD or NADP as acceptor IEP Enrichment
CC GO:0098796 membrane protein complex IEP Enrichment
MF GO:0098809 nitrite reductase activity IEP Enrichment
CC GO:1902494 catalytic complex IEP Enrichment
CC GO:1990204 oxidoreductase complex IEP Enrichment
InterPro domains Description Start Stop
IPR022796 Chloroa_b-bind 46 201
No external refs found!