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  5. Sro951_g223960.1

Sro951_g223960.1 (Contig3277.g25794)


Aliases : Contig3277.g25794

Description : AP-1 complex subunit beta-1


Gene families : OG_01_0000809 (OrthoFinder) Phylogenetic Tree(s): OG0000809_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro951_g223960.1
Cluster HCCA: Cluster_42

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020592.38 tig00020592_g11671.t1 Vesicle trafficking.clathrin coated vesicle (CCV)... 0.08 OrthoFinder
Cre05.g234665 30783487, AP4B4 Vesicle trafficking.endomembrane trafficking.vacuolar... 0.06 OrthoFinder
Cre11.g478156 30775875 Vesicle trafficking.clathrin coated vesicle (CCV)... 0.05 OrthoFinder
Cz02g23050.t1 No alias Clathrin/coatomer adaptor, adaptin-like, N-terminal;... 0.05 OrthoFinder
Cz14g09210.t1 No alias Clathrin/coatomer adaptor, adaptin-like, N-terminal;... 0.05 OrthoFinder
Dusal.0391s00014.1 33187360 Clathrin/coatomer adaptor, adaptin-like, N-terminal... 0.02 OrthoFinder
Dusal.0611s00004.1 33198402 Beta-adaptin appendage, C-terminal subdomain;... 0.03 OrthoFinder
EOD14985 No alias Adaptor protein 2 beta subunit 1 [Ensembl]. 0.07 OrthoFinder
EOD29886 No alias Adaptor protein complex 1 or 2, subunit beta B [Ensembl]. 0.03 OrthoFinder
PTI_00G04320.1 No alias Beta-adaptin appendage, C-terminal subdomain;... 0.06 OrthoFinder
PTI_13G02480.1 No alias Beta-adaptin appendage, C-terminal subdomain;... 0.02 OrthoFinder
SymbC1.scaffold4726.3 4726.3 Clathrin/coatomer adaptor, adaptin-like, N-terminal... 0.01 OrthoFinder
TP04G02380.1 No alias Clathrin/coatomer adaptor, adaptin-like, N-terminal;... 0.02 OrthoFinder
TP09G00880.1 No alias Clathrin/coatomer adaptor, adaptin-like, N-terminal;... 0.04 OrthoFinder
Transcript_contig_54664 54664 Beta-adaptin appendage, C-terminal subdomain;... 0.01 OrthoFinder
Transcript_contig_59442 59442 Clathrin/coatomer adaptor, adaptin-like, N-terminal... 0.02 OrthoFinder
Vocar.0027s0022.1 32887254 Beta-adaptin appendage, C-terminal subdomain;... 0.04 OrthoFinder
lcl|BLLF01000741.1_cds_GFH14559.1_9036 HaLaN_10639, GFH14559 B2-adapt-app_C domain-containing protein 0.03 OrthoFinder
lcl|BLLF01000741.1_cds_GFH14560.1_9037 HaLaN_10640, GFH14560 Adaptin_N domain-containing protein 0.05 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0006886 intracellular protein transport IEA Interproscan
BP GO:0016192 vesicle-mediated transport IEA Interproscan
CC GO:0030117 membrane coat IEA Interproscan
CC GO:0030131 clathrin adaptor complex IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000808 origin recognition complex IEP Enrichment
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003700 DNA-binding transcription factor activity IEP Enrichment
MF GO:0003924 GTPase activity IEP Enrichment
MF GO:0004576 oligosaccharyl transferase activity IEP Enrichment
MF GO:0005092 GDP-dissociation inhibitor activity IEP Enrichment
MF GO:0005198 structural molecule activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
CC GO:0005694 chromosome IEP Enrichment
BP GO:0006260 DNA replication IEP Enrichment
BP GO:0006355 regulation of transcription, DNA-templated IEP Enrichment
BP GO:0006486 protein glycosylation IEP Enrichment
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP Enrichment
BP GO:0007264 small GTPase mediated signal transduction IEP Enrichment
BP GO:0009889 regulation of biosynthetic process IEP Enrichment
BP GO:0010468 regulation of gene expression IEP Enrichment
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Enrichment
MF GO:0016462 pyrophosphatase activity IEP Enrichment
MF GO:0016757 glycosyltransferase activity IEP Enrichment
MF GO:0016758 hexosyltransferase activity IEP Enrichment
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Enrichment
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Enrichment
MF GO:0017111 nucleoside-triphosphatase activity IEP Enrichment
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0019222 regulation of metabolic process IEP Enrichment
CC GO:0030118 clathrin coat IEP Enrichment
CC GO:0030120 vesicle coat IEP Enrichment
CC GO:0030125 clathrin vesicle coat IEP Enrichment
CC GO:0030126 COPI vesicle coat IEP Enrichment
CC GO:0030127 COPII vesicle coat IEP Enrichment
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEP Enrichment
CC GO:0030132 clathrin coat of coated pit IEP Enrichment
BP GO:0031323 regulation of cellular metabolic process IEP Enrichment
BP GO:0031326 regulation of cellular biosynthetic process IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
BP GO:0043413 macromolecule glycosylation IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0048193 Golgi vesicle transport IEP Enrichment
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Enrichment
BP GO:0051252 regulation of RNA metabolic process IEP Enrichment
BP GO:0060255 regulation of macromolecule metabolic process IEP Enrichment
BP GO:0070085 glycosylation IEP Enrichment
BP GO:0080090 regulation of primary metabolic process IEP Enrichment
CC GO:0098797 plasma membrane protein complex IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
MF GO:0140110 transcription regulator activity IEP Enrichment
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Enrichment
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Enrichment
BP GO:2001141 regulation of RNA biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR002553 Clathrin/coatomer_adapt-like_N 24 542
IPR015151 B-adaptin_app_sub_C 776 889
No external refs found!