Sro947_g223440.1 (Contig4683.g34828)

Aliases : Contig4683.g34828

Description : Putative ATP-dependent RNA helicase DHX30

Gene families : OG_01_0000129 (OrthoFinder) Phylogenetic Tree(s): OG0000129_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sro947_g223440.1
Cluster	HCCA: Cluster_211

Target	Alias	Description	ECC score	Gene Family Method
Cre12.g492450	30792289	DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis thaliana	0.03	OrthoFinder
EOD19502	No alias	Helicase, C-terminal; Domain of unknown function...	0.01	OrthoFinder
OT_18G01660.1	No alias	Helicase-associated domain; Helicase, C-terminal; Domain...	0.02	OrthoFinder
SymbC1.scaffold6405.4	6405.4	Helicase, C-terminal [Interproscan].	0.01	OrthoFinder
XM_002500677.1	MICPUN_65643, 65643	Helicase, C-terminal; Helicase-associated domain;...	0.03	OrthoFinder
lcl\|BLLF01000135.1_cds_GFH08065.1_2542	HaLaN_02969, GFH08065	Helicase-associated domain [Interproscan].	0.01	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0008094	ATPase, acting on DNA	None	Extended
MF	GO:0016887	ATPase	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	Enrichment
CC	GO:0005737	cytoplasm	IEP	Enrichment
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	Enrichment
BP	GO:0006457	protein folding	IEP	Enrichment
BP	GO:0008104	protein localization	IEP	Enrichment
BP	GO:0015031	protein transport	IEP	Enrichment
MF	GO:0016614	oxidoreductase activity, acting on CH-OH group of donors	IEP	Enrichment
MF	GO:0016616	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	IEP	Enrichment
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	Enrichment
MF	GO:0031072	heat shock protein binding	IEP	Enrichment
BP	GO:0033036	macromolecule localization	IEP	Enrichment
BP	GO:0043038	amino acid activation	IEP	Enrichment
BP	GO:0043039	tRNA aminoacylation	IEP	Enrichment
BP	GO:0045184	establishment of protein localization	IEP	Enrichment
MF	GO:0051082	unfolded protein binding	IEP	Enrichment
MF	GO:0051287	NAD binding	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR007502	Helicase-assoc_dom	1140	1252
IPR011545	DEAD/DEAH_box_helicase_dom	691	833
IPR011709	DUF1605	1379	1435
IPR001650	Helicase_C	960	1078

External Links

No external refs found!