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  5. Sro944_g222900.1

Sro944_g222900.1 (Contig4161.g31782)


Aliases : Contig4161.g31782

Description : Probable ATP-dependent RNA helicase spindle-E


Gene families : OG_01_0000129 (OrthoFinder) Phylogenetic Tree(s): OG0000129_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro944_g222900.1
Cluster HCCA: Cluster_23

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000786.1 tig00000786_g4048.t1 DExH-box ATP-dependent RNA helicase DExH3 OS=Arabidopsis thaliana 0.01 OrthoFinder
OT_06G02830.1 No alias Helicase-associated domain; Helicase, C-terminal; Domain... 0.02 OrthoFinder
PTI_28G00540.1 No alias Helicase, C-terminal; Helicase-associated domain; Domain... 0.01 OrthoFinder
SymbC1.scaffold6405.4 6405.4 Helicase, C-terminal [Interproscan]. 0.02 OrthoFinder
XM_002507013.1 MICPUN_77912, 77912 Helicase, C-terminal; Helicase-associated domain;... 0.01 OrthoFinder
XM_003063815.1 MicpuC2_53611, 53611 Helicase, C-terminal; Helicase-associated domain; Domain... 0.03 OrthoFinder
XM_003063816.1 MicpuC2_53612, 53612 DEAD/DEAH box helicase domain [Interproscan]. 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0046872 metal ion binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0006820 anion transport IEP Enrichment
BP GO:0008033 tRNA processing IEP Enrichment
MF GO:0008146 sulfotransferase activity IEP Enrichment
BP GO:0009056 catabolic process IEP Enrichment
BP GO:0009057 macromolecule catabolic process IEP Enrichment
CC GO:0016021 integral component of membrane IEP Enrichment
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP Enrichment
MF GO:0016782 transferase activity, transferring sulphur-containing groups IEP Enrichment
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Enrichment
BP GO:0030163 protein catabolic process IEP Enrichment
CC GO:0031224 intrinsic component of membrane IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
MF GO:0050660 flavin adenine dinucleotide binding IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
MF GO:0140101 catalytic activity, acting on a tRNA IEP Enrichment
BP GO:1901565 organonitrogen compound catabolic process IEP Enrichment
BP GO:1901575 organic substance catabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR001650 Helicase_C 270 401
IPR019446 DUF2431 894 1012
IPR000571 Znf_CCCH 790 810
IPR011545 DEAD/DEAH_box_helicase_dom 15 175
No external refs found!