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  5. Sro927_g221190.1

Sro927_g221190.1 (Contig182.g2116)


Aliases : Contig182.g2116

Description : Zinc finger, MYND-type [Interproscan].


Gene families : OG_01_0000887 (OrthoFinder) Phylogenetic Tree(s): OG0000887_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro927_g221190.1
Cluster HCCA: Cluster_246

Target Alias Description ECC score Gene Family Method Actions
Sro1418_g270940.1 Contig4752.g35210 Hypothetical protein 0.05 OrthoFinder
Sro1441_g272920.1 Contig2512.g20549 Hypothetical protein 0.04 OrthoFinder
Sro201_g085130.1 Contig2914.g23182 Tetratricopeptide repeat; MYND-like zinc finger,... 0.04 OrthoFinder
Sro241_g096420.1 Contig4317.g32560 Hypothetical protein 0.04 OrthoFinder
Sro25_g017390.1 Contig1417.g13078 Hypothetical protein 0.02 OrthoFinder
Sro374_g129190.1 Contig347.g4680 Hypothetical protein 0.03 OrthoFinder
Sro949_g223640.1 Contig3294.g25864 Hypothetical protein 0.04 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003896 DNA primase activity IEP Enrichment
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
BP GO:0006259 DNA metabolic process IEP Enrichment
BP GO:0006260 DNA replication IEP Enrichment
BP GO:0006269 DNA replication, synthesis of RNA primer IEP Enrichment
MF GO:0009055 electron transfer activity IEP Enrichment
BP GO:0009058 biosynthetic process IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Enrichment
MF GO:0016779 nucleotidyltransferase activity IEP Enrichment
BP GO:0018130 heterocycle biosynthetic process IEP Enrichment
BP GO:0019438 aromatic compound biosynthetic process IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
MF GO:0034062 5'-3' RNA polymerase activity IEP Enrichment
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Enrichment
BP GO:0044249 cellular biosynthetic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Enrichment
MF GO:0051536 iron-sulfur cluster binding IEP Enrichment
MF GO:0051540 metal cluster binding IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0097747 RNA polymerase activity IEP Enrichment
BP GO:1901362 organic cyclic compound biosynthetic process IEP Enrichment
BP GO:1901576 organic substance biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR002893 Znf_MYND 19 66
No external refs found!