1. Home
  2. Species
  3. Seminavis robusta
  4. Sequence
  5. Sro884_mit_g215880.1

Sro884_mit_g215880.1 (Rps13)


Aliases : Rps13

Description : Rps13


Gene families : OG_01_0000909 (OrthoFinder) Phylogenetic Tree(s): OG0000909_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro884_mit_g215880.1
Cluster HCCA: Cluster_109

Target Alias Description ECC score Gene Family Method Actions
Cre06.g288400 30779477, MRPS11 30S ribosomal protein S11, chloroplastic OS=Chlorella vulgaris 0.04 OrthoFinder
Cre12.g493950 30792612, PRPS13 Protein biosynthesis.organelle translation... 0.09 OrthoFinder
Cre16.g674350 30777293, MRPS13 No description available 0.04 OrthoFinder
Cz02g19040.t1 No alias Ribosomal protein S13 [Interproscan]. 0.04 OrthoFinder
CzCPg00340.t1 No alias Ribosomal protein S11 [Interproscan]. 0.14 OrthoFinder
Dusal.1916s00001.1 33187808 Ribosomal protein S13 [Interproscan]. 0.02 OrthoFinder
EOD30026 No alias Ribosomal protein S11 [Interproscan]. 0.03 OrthoFinder
OT_03G05840.1 No alias Ribosomal protein S13 [Interproscan]. 0.09 OrthoFinder
Transcript_contig_57743 57743 Ribosomal protein S13 [Interproscan]. 0.02 OrthoFinder
Transcript_contig_80871 80871 Ribosomal protein S11 [Interproscan]. 0.05 OrthoFinder
Vocar.0001s1404.1 32884152 Ribosomal protein S11 [Interproscan]. 0.01 OrthoFinder
XM_002506993.1 MICPUN_89270, 89270 Ribosomal protein S13, chloroplast precursor (RPS13) 0.09 OrthoFinder
XM_003054733.1 MicpuC2_45129, 45129 Ribosomal protein S13, chloroplast precursor (RPS13) 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0003678 DNA helicase activity IEP Enrichment
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Enrichment
BP GO:0006310 DNA recombination IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
BP GO:0006754 ATP biosynthetic process IEP Enrichment
BP GO:0006812 cation transport IEP Enrichment
BP GO:0009141 nucleoside triphosphate metabolic process IEP Enrichment
BP GO:0009142 nucleoside triphosphate biosynthetic process IEP Enrichment
BP GO:0009144 purine nucleoside triphosphate metabolic process IEP Enrichment
BP GO:0009145 purine nucleoside triphosphate biosynthetic process IEP Enrichment
BP GO:0009199 ribonucleoside triphosphate metabolic process IEP Enrichment
BP GO:0009201 ribonucleoside triphosphate biosynthetic process IEP Enrichment
BP GO:0009205 purine ribonucleoside triphosphate metabolic process IEP Enrichment
BP GO:0009206 purine ribonucleoside triphosphate biosynthetic process IEP Enrichment
CC GO:0009512 cytochrome b6f complex IEP Enrichment
MF GO:0015002 obsolete heme-copper terminal oxidase activity IEP Enrichment
BP GO:0015985 energy coupled proton transport, down electrochemical gradient IEP Enrichment
BP GO:0015986 ATP synthesis coupled proton transport IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
MF GO:0016779 nucleotidyltransferase activity IEP Enrichment
BP GO:0018130 heterocycle biosynthetic process IEP Enrichment
BP GO:0019438 aromatic compound biosynthetic process IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
MF GO:0034062 5'-3' RNA polymerase activity IEP Enrichment
BP GO:0034220 ion transmembrane transport IEP Enrichment
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Enrichment
BP GO:0046034 ATP metabolic process IEP Enrichment
CC GO:0070069 cytochrome complex IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
MF GO:0097747 RNA polymerase activity IEP Enrichment
BP GO:0098655 cation transmembrane transport IEP Enrichment
BP GO:0098660 inorganic ion transmembrane transport IEP Enrichment
BP GO:0098662 inorganic cation transmembrane transport IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
BP GO:1901362 organic cyclic compound biosynthetic process IEP Enrichment
BP GO:1902600 proton transmembrane transport IEP Enrichment
InterPro domains Description Start Stop
IPR001892 Ribosomal_S13 4 110
No external refs found!