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  5. Sro884_mit_g215700.1

Sro884_mit_g215700.1 (Rpl6)


Aliases : Rpl6

Description : Rpl6


Gene families : OG_01_0002270 (OrthoFinder) Phylogenetic Tree(s): OG0002270_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro884_mit_g215700.1
Cluster HCCA: Cluster_109

Target Alias Description ECC score Gene Family Method Actions
Cre09.g415950 30781212, PRPL6 Protein biosynthesis.organelle translation... 0.09 OrthoFinder
Cz10g03060.t1 No alias Ribosomal protein L6, alpha-beta domain [Interproscan]. 0.06 OrthoFinder
Dusal.0148s00001.1 33200410 Ribosomal protein L6, alpha-beta domain [Interproscan]. 0.03 OrthoFinder
EOD12393 No alias 50S ribosomal protein L6 [Ensembl]. 0.03 OrthoFinder
EOD39267 No alias Ribosomal protein L6, alpha-beta domain [Interproscan]. 0.03 OrthoFinder
OT_15G02320.1 No alias Ribosomal protein L6, alpha-beta domain [Interproscan]. 0.08 OrthoFinder
TPCG02600.1 No alias Ribosomal protein L6, alpha-beta domain [Interproscan]. 0.14 OrthoFinder
Vocar.0011s0204.1 32895344 Ribosomal protein L6, alpha-beta domain [Interproscan]. 0.01 OrthoFinder
XM_002505251.1 MICPUN_92039, 92039 Ribosomal protein L6, alpha-beta domain [Interproscan]. 0.09 OrthoFinder
XM_003060275.1 MicpuC2_45705, 45705 Ribosomal protein L6, alpha-beta domain [Interproscan]. 0.05 OrthoFinder
lcl|BLLF01001465.1_cds_GFH19448.1_13925 HaLaN_16394, GFH19448 Ribosomal protein L6, alpha-beta domain [Interproscan]. 0.04 OrthoFinder
lcl|LHPG02000015.1_cds_PRW34061.1_2806 PRW34061 50S ribosomal chloroplastic 0.05 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
MF GO:0019843 rRNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0003954 NADH dehydrogenase activity IEP Enrichment
MF GO:0003955 NAD(P)H dehydrogenase (quinone) activity IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
MF GO:0008137 NADH dehydrogenase (ubiquinone) activity IEP Enrichment
MF GO:0015002 obsolete heme-copper terminal oxidase activity IEP Enrichment
CC GO:0015934 large ribosomal subunit IEP Enrichment
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP Enrichment
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP Enrichment
MF GO:0016779 nucleotidyltransferase activity IEP Enrichment
BP GO:0017038 protein import IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
CC GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain IEP Enrichment
MF GO:0034062 5'-3' RNA polymerase activity IEP Enrichment
CC GO:0044391 ribosomal subunit IEP Enrichment
MF GO:0050136 NADH dehydrogenase (quinone) activity IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
MF GO:0097747 RNA polymerase activity IEP Enrichment
InterPro domains Description Start Stop
IPR020040 Ribosomal_L6_a/b-dom 16 94
No external refs found!