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  5. Sro868_g213240.1

Sro868_g213240.1 (Contig2961.g23526)


Aliases : Contig2961.g23526

Description : Pore complex protein Nup98-Nup96


Gene families : OG_01_0001263 (OrthoFinder) Phylogenetic Tree(s): OG0001263_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro868_g213240.1
Cluster HCCA: Cluster_164

Target Alias Description ECC score Gene Family Method Actions
Cre02.g086887 30784868 Nuclear pore complex protein NUP98A OS=Arabidopsis thaliana 0.02 OrthoFinder
Cz17g09200.t1 No alias Peptidase S59, nucleoporin; Nuclear protein 96 [Interproscan]. 0.02 OrthoFinder
OT_11G00840.1 No alias Nuclear protein 96 [Interproscan]. 0.02 OrthoFinder
PTI_08G02240.1 No alias Nuclear protein 96; Peptidase S59, nucleoporin;... 0.06 OrthoFinder
Vocar.0004s0438.1 32889869 Nuclear protein 96; Peptidase S59, nucleoporin [Interproscan]. 0.03 OrthoFinder
XM_003061369.1 MicpuC2_41574, 41574 Nuclear protein 96 [Interproscan]. 0.02 OrthoFinder

Type GO Term Name Evidence Source
CC GO:0005643 nuclear pore IEA Interproscan
BP GO:0006913 nucleocytoplasmic transport IEA Interproscan
MF GO:0017056 structural constituent of nuclear pore IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
MF GO:0003777 microtubule motor activity IEP Enrichment
MF GO:0003968 RNA-directed 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
BP GO:0006325 chromatin organization IEP Enrichment
BP GO:0006338 chromatin remodeling IEP Enrichment
BP GO:0006405 RNA export from nucleus IEP Enrichment
BP GO:0006406 mRNA export from nucleus IEP Enrichment
BP GO:0006928 movement of cell or subcellular component IEP Enrichment
BP GO:0007017 microtubule-based process IEP Enrichment
BP GO:0007018 microtubule-based movement IEP Enrichment
MF GO:0008017 microtubule binding IEP Enrichment
MF GO:0008092 cytoskeletal protein binding IEP Enrichment
MF GO:0008270 zinc ion binding IEP Enrichment
MF GO:0015631 tubulin binding IEP Enrichment
BP GO:0015931 nucleobase-containing compound transport IEP Enrichment
BP GO:0016579 protein deubiquitination IEP Enrichment
MF GO:0016779 nucleotidyltransferase activity IEP Enrichment
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Enrichment
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Enrichment
BP GO:0016973 poly(A)+ mRNA export from nucleus IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
MF GO:0034062 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0050657 nucleic acid transport IEP Enrichment
BP GO:0050658 RNA transport IEP Enrichment
BP GO:0051028 mRNA transport IEP Enrichment
BP GO:0051168 nuclear export IEP Enrichment
BP GO:0051236 establishment of RNA localization IEP Enrichment
BP GO:0070646 protein modification by small protein removal IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
MF GO:0097747 RNA polymerase activity IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR025574 Nucleoporin_FG_rpt 305 393
IPR025574 Nucleoporin_FG_rpt 130 202
IPR025574 Nucleoporin_FG_rpt 692 718
IPR021967 Nup96 1218 1482
IPR007230 Peptidase_S59 783 926
No external refs found!