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  5. Sro858_g211890.1

Sro858_g211890.1 (Contig4009.g30835)


Aliases : Contig4009.g30835

Description : Transmembrane and coiled-coil


Gene families : OG_01_0005245 (OrthoFinder) Phylogenetic Tree(s): OG0005245_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro858_g211890.1
Cluster HCCA: Cluster_321

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000217.34 tig00000217_g19168.t1 No description available 0.04 OrthoFinder
Cre03.g182900 30788122 No description available 0.02 OrthoFinder
PTI_21G00730.1 No alias Integral membrane protein EMC3/TMCO1-like [Interproscan]. 0.02 OrthoFinder
TP06G04280.1 No alias Hypothetical protein 0.01 OrthoFinder

Type GO Term Name Evidence Source
CC GO:0016020 membrane IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000814 ESCRT II complex IEP Enrichment
MF GO:0002161 aminoacyl-tRNA editing activity IEP Enrichment
MF GO:0003712 transcription coregulator activity IEP Enrichment
MF GO:0003735 structural constituent of ribosome IEP Enrichment
MF GO:0005048 signal sequence binding IEP Enrichment
MF GO:0005198 structural molecule activity IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
CC GO:0005840 ribosome IEP Enrichment
CC GO:0005869 dynactin complex IEP Enrichment
CC GO:0005875 microtubule associated complex IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
BP GO:0006352 DNA-templated transcription, initiation IEP Enrichment
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Enrichment
BP GO:0006412 translation IEP Enrichment
BP GO:0006518 peptide metabolic process IEP Enrichment
BP GO:0006621 protein retention in ER lumen IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
BP GO:0006810 transport IEP Enrichment
BP GO:0006897 endocytosis IEP Enrichment
BP GO:0006904 vesicle docking involved in exocytosis IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
MF GO:0008233 peptidase activity IEP Enrichment
BP GO:0009058 biosynthetic process IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016192 vesicle-mediated transport IEP Enrichment
CC GO:0016592 mediator complex IEP Enrichment
MF GO:0016787 hydrolase activity IEP Enrichment
CC GO:0017119 Golgi transport complex IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
BP GO:0019538 protein metabolic process IEP Enrichment
BP GO:0022406 membrane docking IEP Enrichment
CC GO:0030008 TRAPP complex IEP Enrichment
CC GO:0030880 RNA polymerase complex IEP Enrichment
BP GO:0032507 maintenance of protein location in cell IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
MF GO:0033218 amide binding IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
BP GO:0035437 maintenance of protein localization in endoplasmic reticulum IEP Enrichment
CC GO:0036452 ESCRT complex IEP Enrichment
MF GO:0042277 peptide binding IEP Enrichment
BP GO:0043043 peptide biosynthetic process IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043228 non-membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Enrichment
BP GO:0043603 cellular amide metabolic process IEP Enrichment
BP GO:0043604 amide biosynthetic process IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0044249 cellular biosynthetic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0044267 cellular protein metabolic process IEP Enrichment
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Enrichment
BP GO:0045185 maintenance of protein location IEP Enrichment
MF GO:0046923 ER retention sequence binding IEP Enrichment
BP GO:0048278 vesicle docking IEP Enrichment
BP GO:0051179 localization IEP Enrichment
BP GO:0051234 establishment of localization IEP Enrichment
BP GO:0051235 maintenance of location IEP Enrichment
BP GO:0051640 organelle localization IEP Enrichment
BP GO:0051651 maintenance of location in cell IEP Enrichment
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Enrichment
BP GO:0070070 proton-transporting V-type ATPase complex assembly IEP Enrichment
BP GO:0070071 proton-transporting two-sector ATPase complex assembly IEP Enrichment
BP GO:0070072 vacuolar proton-transporting V-type ATPase complex assembly IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
BP GO:0071985 multivesicular body sorting pathway IEP Enrichment
BP GO:0072595 maintenance of protein localization in organelle IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
CC GO:0099023 vesicle tethering complex IEP Enrichment
BP GO:0140029 exocytic process IEP Enrichment
BP GO:0140056 organelle localization by membrane tethering IEP Enrichment
CC GO:0140535 intracellular protein-containing complex IEP Enrichment
BP GO:1901564 organonitrogen compound metabolic process IEP Enrichment
BP GO:1901566 organonitrogen compound biosynthetic process IEP Enrichment
BP GO:1901576 organic substance biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR002809 EMC3/TMCO1 29 181
No external refs found!