1. Home
  2. Species
  3. Seminavis robusta
  4. Sequence
  5. Sro82_g043740.1

Sro82_g043740.1 (Contig4032.g30965)


Aliases : Contig4032.g30965

Description : Cryptochrome-1


Gene families : OG_01_0000085 (OrthoFinder) Phylogenetic Tree(s): OG0000085_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro82_g043740.1
Cluster HCCA: Cluster_234

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000391.2 tig00000391_g24833.t1 DNA damage response.DNA repair... 0.03 OrthoFinder
Cpa|evm.model.tig00020927.32 tig00020927_g15961.t1 Blue-light photoreceptor PHR2 OS=Arabidopsis thaliana 0.01 OrthoFinder
Cpa|evm.model.tig00020965.69 tig00020965_g16882.t1 Cryptochrome DASH, chloroplastic/mitochondrial... 0.03 OrthoFinder
Cpa|evm.model.tig00020965.70 tig00020965_g16882.t1 Cryptochrome DASH, chloroplastic/mitochondrial... 0.03 OrthoFinder
Cre06.g278251 30779665 DNA damage response.DNA repair... 0.02 OrthoFinder
EOD04007 No alias Cryptochrome/DNA photolyase, FAD-binding domain; DNA... 0.02 OrthoFinder
EOD11134 No alias Putative Cry-DASH cryptochrome [Ensembl]. 0.02 OrthoFinder
EOD15451 No alias Putative Cry-DASH cryptochrome [Ensembl]. 0.01 OrthoFinder
Transcript_contig_78998 78998 DNA photolyase, N-terminal; Cryptochrome/DNA photolyase,... 0.01 OrthoFinder
XM_003057723.1 MicpuC2_16082, 16082 Cryptochrome/DNA photolyase, FAD-binding domain; DNA... 0.02 OrthoFinder
lcl|BLLF01004488.1_cds_GFH29709.1_24186 HaLaN_28418, GFH29709 Photolyase/cryptochrome alpha/beta domain-containing protein 0.01 OrthoFinder
lcl|LHPG02000004.1_cds_PRW58875.1_7566 PRW58875 UVR3 3-like 6-4 DNA photolyase 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0003333 amino acid transmembrane transport IEP Enrichment
MF GO:0005319 lipid transporter activity IEP Enrichment
MF GO:0005507 copper ion binding IEP Enrichment
CC GO:0005737 cytoplasm IEP Enrichment
BP GO:0006865 amino acid transport IEP Enrichment
BP GO:0006869 lipid transport IEP Enrichment
BP GO:0015849 organic acid transport IEP Enrichment
MF GO:0016491 oxidoreductase activity IEP Enrichment
MF GO:0043169 cation binding IEP Enrichment
MF GO:0046872 metal ion binding IEP Enrichment
MF GO:0046914 transition metal ion binding IEP Enrichment
BP GO:0055114 obsolete oxidation-reduction process IEP Enrichment
BP GO:0061024 membrane organization IEP Enrichment
BP GO:0071702 organic substance transport IEP Enrichment
BP GO:0120009 intermembrane lipid transfer IEP Enrichment
MF GO:0120013 lipid transfer activity IEP Enrichment
BP GO:1903825 organic acid transmembrane transport IEP Enrichment
BP GO:1905039 carboxylic acid transmembrane transport IEP Enrichment
InterPro domains Description Start Stop
IPR005101 Cryptochr/Photolyase_FAD-bd 318 521
IPR006050 DNA_photolyase_N 15 178
No external refs found!