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  5. Sro819_g207040.1

Sro819_g207040.1 (Contig8.g90)


Aliases : Contig8.g90

Description : HEAT repeat-containing protein 1


Gene families : OG_01_0001400 (OrthoFinder) Phylogenetic Tree(s): OG0001400_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro819_g207040.1
Cluster HCCA: Cluster_177

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000074.2 tig00000074_g1194.t1 Uncharacterized protein At3g06530 OS=Arabidopsis thaliana 0.02 OrthoFinder
Cre12.g548000 30793370 Uncharacterized protein At3g06530 OS=Arabidopsis thaliana 0.03 OrthoFinder
Cz07g10090.t1 No alias U3 small nucleolar RNA-associated protein 10, N-terminal... 0.02 OrthoFinder
Cz07g10100.t1 No alias BP28, C-terminal domain [Interproscan]. 0.04 OrthoFinder
EOD15958 No alias BP28, C-terminal domain [Interproscan]. 0.08 OrthoFinder
OT_08G00810.1 No alias BP28, C-terminal domain; U3 small nucleolar... 0.06 OrthoFinder
PTI_08G04460.1 No alias BP28, C-terminal domain; U3 small nucleolar... 0.17 OrthoFinder
TP06G00080.1 No alias Hypothetical protein 0.08 OrthoFinder
Transcript_contig_53878 53878 BP28, C-terminal domain; U3 small nucleolar... 0.05 OrthoFinder
Vocar.0007s0207.1 32888237 U3 small nucleolar RNA-associated protein 10,... 0.05 OrthoFinder
XM_002501766.1 MICPUN_57945, 57945 BP28, C-terminal domain; U3 small nucleolar... 0.06 OrthoFinder
XM_003058444.1 MicpuC2_68174, 68174 Hypothetical protein 0.07 OrthoFinder
XM_003058445.1 MicpuC2_58070, 58070 BP28, C-terminal domain [Interproscan]. 0.06 OrthoFinder
lcl|BLLF01000474.1_cds_GFH12167.1_6644 HaLaN_07804, GFH12167 BP28CT domain-containing protein 0.01 OrthoFinder
lcl|LHPG02000001.1_cds_PRW61623.1_230 PRW61623 U3 small nucleolar RNA-associated protein 10,... 0.1 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003724 RNA helicase activity IEP Enrichment
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0004386 helicase activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
MF GO:0008094 ATPase, acting on DNA IEP Enrichment
MF GO:0008134 transcription factor binding IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
MF GO:0008173 RNA methyltransferase activity IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
MF GO:0016887 ATPase IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
BP GO:0032259 methylation IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
MF GO:0034062 5'-3' RNA polymerase activity IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
MF GO:0097747 RNA polymerase activity IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR012954 BP28_C_dom 2026 2157
No external refs found!