Sro78_g042340.1 (Contig1698.g15210)

Aliases : Contig1698.g15210

Description : RNA helicase SUB2

Gene families : OG_01_0003167 (OrthoFinder) Phylogenetic Tree(s): OG0003167_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sro78_g042340.1
Cluster	HCCA: Cluster_269

Target	Alias	Description	ECC score	Gene Family Method
Cre17.g719000	30782166	RNA processing.messenger ribonucleoprotein particle...	0.02	OrthoFinder
Cz03g22040.t1	No alias	Helicase, C-terminal; DEAD/DEAH box helicase domain...	0.01	OrthoFinder
OT_14G01410.1	No alias	Helicase, C-terminal; DEAD/DEAH box helicase domain...	0.01	OrthoFinder
Transcript_contig_54317	54317	DEAD/DEAH box helicase domain [Interproscan].	0.03	OrthoFinder
Vocar.0004s0160.1	32889607	DEAD/DEAH box helicase domain; Helicase, C-terminal...	0.02	OrthoFinder
XM_002505713.1	MICPUN_109373, 109373	Helicase, C-terminal; DEAD/DEAH box helicase domain...	0.01	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0005048	signal sequence binding	IEP	Enrichment
MF	GO:0005525	GTP binding	IEP	Enrichment
BP	GO:0006621	protein retention in ER lumen	IEP	Enrichment
MF	GO:0019001	guanyl nucleotide binding	IEP	Enrichment
BP	GO:0032507	maintenance of protein location in cell	IEP	Enrichment
MF	GO:0032561	guanyl ribonucleotide binding	IEP	Enrichment
MF	GO:0033218	amide binding	IEP	Enrichment
BP	GO:0035437	maintenance of protein localization in endoplasmic reticulum	IEP	Enrichment
MF	GO:0042277	peptide binding	IEP	Enrichment
BP	GO:0045185	maintenance of protein location	IEP	Enrichment
MF	GO:0046923	ER retention sequence binding	IEP	Enrichment
BP	GO:0051235	maintenance of location	IEP	Enrichment
BP	GO:0051651	maintenance of location in cell	IEP	Enrichment
BP	GO:0072595	maintenance of protein localization in organelle	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR011545	DEAD/DEAH_box_helicase_dom	70	247
IPR001650	Helicase_C	287	394

External Links

No external refs found!