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  5. Sro785_g202140.1

Sro785_g202140.1 (Contig2407.g19692)


Aliases : Contig2407.g19692

Description : Probable ATP-dependent RNA helicase DDX6 (Fragment)


Gene families : OG_01_0001369 (OrthoFinder) Phylogenetic Tree(s): OG0001369_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood HRR: Sro785_g202140.1
Cluster HCCA: Cluster_321

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001086.7 tig00001086_g6841.t1 DEAD-box ATP-dependent RNA helicase 6 OS=Oryza sativa... 0.02 OrthoFinder
XM_003061994.1 MicpuC2_29042, 29042 Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.02 OrthoFinder
lcl|BLLF01001224.1_cds_GFH17930.1_12407 HaLaN_14655, GFH17930 DEAD-box ATP-dependent RNA helicase 0.02 OrthoFinder
lcl|VRMN01000009.1_cds_KAA8492571.1_9264 KAA8492571 DEAD-box ATP-dependent RNA helicase 8 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0002161 aminoacyl-tRNA editing activity IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005869 dynactin complex IEP Enrichment
CC GO:0005875 microtubule associated complex IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
BP GO:0007017 microtubule-based process IEP Enrichment
BP GO:0010024 phytochromobilin biosynthetic process IEP Enrichment
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP Enrichment
MF GO:0016636 oxidoreductase activity, acting on the CH-CH group of donors, iron-sulfur protein as acceptor IEP Enrichment
CC GO:0017119 Golgi transport complex IEP Enrichment
CC GO:0030008 TRAPP complex IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
BP GO:0033013 tetrapyrrole metabolic process IEP Enrichment
BP GO:0033014 tetrapyrrole biosynthetic process IEP Enrichment
MF GO:0046914 transition metal ion binding IEP Enrichment
MF GO:0050897 cobalt ion binding IEP Enrichment
BP GO:0051202 phytochromobilin metabolic process IEP Enrichment
MF GO:0052689 carboxylic ester hydrolase activity IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
CC GO:0099023 vesicle tethering complex IEP Enrichment
CC GO:0140535 intracellular protein-containing complex IEP Enrichment
InterPro domains Description Start Stop
IPR001650 Helicase_C 268 374
IPR011545 DEAD/DEAH_box_helicase_dom 67 231
No external refs found!