Sro767_g199480.1 (Contig2377.g19536)

Aliases : Contig2377.g19536

Description : Of chromosomes protein 1A

Gene families : OG_01_0001598 (OrthoFinder) Phylogenetic Tree(s): OG0001598_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sro767_g199480.1
Cluster	HCCA: Cluster_130

Target	Alias	Description	ECC score	Gene Family Method
Cpa\|evm.model.tig00020553.145	tig00020553_g10636.t1	Cell cycle.mitosis and meiosis.sister chromatid...	0.01	OrthoFinder
Cre15.g635800	30783526, SMC1	Structural maintenance of chromosomes protein 1...	0.02	OrthoFinder
Cz03g08200.t1	No alias	RecF/RecN/SMC, N-terminal; SMCs flexible hinge [Interproscan].	0.02	OrthoFinder
Dusal.0197s00008.1	33188527	SMCs flexible hinge [Interproscan].	0.03	OrthoFinder
EOD19992	No alias	SMCs flexible hinge; RecF/RecN/SMC, N-terminal [Interproscan].	0.04	OrthoFinder
EOD19993	No alias	Hypothetical protein [Ensembl].	0.04	OrthoFinder
OT_03G03810.1	No alias	RecF/RecN/SMC, N-terminal; SMCs flexible hinge [Interproscan].	0.05	OrthoFinder
PTI_02G06300.1	No alias	RecF/RecN/SMC, N-terminal; SMCs flexible hinge [Interproscan].	0.03	OrthoFinder
TP07G02860.1	No alias	RecF/RecN/SMC, N-terminal; SMCs flexible hinge [Interproscan].	0.02	OrthoFinder
XM_002499807.1	MICPUN_56550, 56550	Condensin complex component	0.03	OrthoFinder
XM_003055252.1	MicpuC2_50904, 50904	Condensin complex component	0.02	OrthoFinder
lcl\|LHPG02000019.1_cds_PRW32480.1_3950	PRW32480	Structural maintenance of chromosomes 1	0.02	OrthoFinder
lcl\|VRMN01000001.1_cds_KAA8499351.1_8304	KAA8499351	Structural maintenance of chromosomes protein 1	0.02	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005694	chromosome	IEA	Interproscan
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0051276	chromosome organization	IEA	Interproscan
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000723	telomere maintenance	IEP	Enrichment
CC	GO:0000775	chromosome, centromeric region	IEP	Enrichment
MF	GO:0003676	nucleic acid binding	IEP	Enrichment
MF	GO:0003677	DNA binding	IEP	Enrichment
MF	GO:0003678	DNA helicase activity	IEP	Enrichment
MF	GO:0003909	DNA ligase activity	IEP	Enrichment
MF	GO:0003910	DNA ligase (ATP) activity	IEP	Enrichment
MF	GO:0004198	calcium-dependent cysteine-type endopeptidase activity	IEP	Enrichment
MF	GO:0004386	helicase activity	IEP	Enrichment
CC	GO:0005634	nucleus	IEP	Enrichment
CC	GO:0005643	nuclear pore	IEP	Enrichment
BP	GO:0006259	DNA metabolic process	IEP	Enrichment
BP	GO:0006405	RNA export from nucleus	IEP	Enrichment
BP	GO:0006406	mRNA export from nucleus	IEP	Enrichment
BP	GO:0006508	proteolysis	IEP	Enrichment
BP	GO:0006606	protein import into nucleus	IEP	Enrichment
BP	GO:0006807	nitrogen compound metabolic process	IEP	Enrichment
BP	GO:0006886	intracellular protein transport	IEP	Enrichment
BP	GO:0006913	nucleocytoplasmic transport	IEP	Enrichment
BP	GO:0007059	chromosome segregation	IEP	Enrichment
MF	GO:0008094	ATPase, acting on DNA	IEP	Enrichment
BP	GO:0008104	protein localization	IEP	Enrichment
MF	GO:0008134	transcription factor binding	IEP	Enrichment
MF	GO:0008146	sulfotransferase activity	IEP	Enrichment
MF	GO:0008233	peptidase activity	IEP	Enrichment
MF	GO:0008234	cysteine-type peptidase activity	IEP	Enrichment
MF	GO:0008641	ubiquitin-like modifier activating enzyme activity	IEP	Enrichment
BP	GO:0015031	protein transport	IEP	Enrichment
MF	GO:0016782	transferase activity, transferring sulphur-containing groups	IEP	Enrichment
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	Enrichment
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEP	Enrichment
MF	GO:0016874	ligase activity	IEP	Enrichment
MF	GO:0016877	ligase activity, forming carbon-sulfur bonds	IEP	Enrichment
MF	GO:0016886	ligase activity, forming phosphoric ester bonds	IEP	Enrichment
BP	GO:0016973	poly(A)+ mRNA export from nucleus	IEP	Enrichment
MF	GO:0017025	TBP-class protein binding	IEP	Enrichment
BP	GO:0017038	protein import	IEP	Enrichment
MF	GO:0017056	structural constituent of nuclear pore	IEP	Enrichment
BP	GO:0022402	cell cycle process	IEP	Enrichment
BP	GO:0022414	reproductive process	IEP	Enrichment
BP	GO:0032200	telomere organization	IEP	Enrichment
BP	GO:0033036	macromolecule localization	IEP	Enrichment
BP	GO:0033365	protein localization to organelle	IEP	Enrichment
BP	GO:0034504	protein localization to nucleus	IEP	Enrichment
BP	GO:0034613	cellular protein localization	IEP	Enrichment
CC	GO:0042575	DNA polymerase complex	IEP	Enrichment
BP	GO:0043170	macromolecule metabolic process	IEP	Enrichment
CC	GO:0043227	membrane-bounded organelle	IEP	Enrichment
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	Enrichment
CC	GO:0043625	delta DNA polymerase complex	IEP	Enrichment
BP	GO:0045132	meiotic chromosome segregation	IEP	Enrichment
BP	GO:0045184	establishment of protein localization	IEP	Enrichment
BP	GO:0046907	intracellular transport	IEP	Enrichment
BP	GO:0050657	nucleic acid transport	IEP	Enrichment
BP	GO:0050658	RNA transport	IEP	Enrichment
BP	GO:0051028	mRNA transport	IEP	Enrichment
BP	GO:0051168	nuclear export	IEP	Enrichment
BP	GO:0051169	nuclear transport	IEP	Enrichment
BP	GO:0051170	import into nucleus	IEP	Enrichment
BP	GO:0051236	establishment of RNA localization	IEP	Enrichment
BP	GO:0051641	cellular localization	IEP	Enrichment
BP	GO:0051649	establishment of localization in cell	IEP	Enrichment
BP	GO:0060249	anatomical structure homeostasis	IEP	Enrichment
CC	GO:0061695	transferase complex, transferring phosphorus-containing groups	IEP	Enrichment
BP	GO:0070727	cellular macromolecule localization	IEP	Enrichment
BP	GO:0071702	organic substance transport	IEP	Enrichment
BP	GO:0071704	organic substance metabolic process	IEP	Enrichment
BP	GO:0071705	nitrogen compound transport	IEP	Enrichment
BP	GO:0072594	establishment of protein localization to organelle	IEP	Enrichment
CC	GO:0098687	chromosomal region	IEP	Enrichment
BP	GO:0098813	nuclear chromosome segregation	IEP	Enrichment
MF	GO:0140097	catalytic activity, acting on DNA	IEP	Enrichment
MF	GO:0140296	general transcription initiation factor binding	IEP	Enrichment
CC	GO:0140513	nuclear protein-containing complex	IEP	Enrichment
BP	GO:1903046	meiotic cell cycle process	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR010935	SMC_hinge	512	633
IPR003395	RecF/RecN/SMC_N	4	1239

External Links

No external refs found!

Sro767_g199480.1 (Contig2377.g19536)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation