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  5. Sro72_g040020.1

Sro72_g040020.1 (Contig1459.g13401)


Aliases : Contig1459.g13401

Description : Dependent rRNA helicase


Gene families : OG_01_0002068 (OrthoFinder) Phylogenetic Tree(s): OG0002068_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro72_g040020.1
Cluster HCCA: Cluster_51

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020684.38 tig00020684_g12886.t1 DEAD-box ATP-dependent RNA helicase 18 OS=Oryza sativa... 0.05 OrthoFinder
Cre06.g282600 30779817 DEAD-box ATP-dependent RNA helicase 18 OS=Arabidopsis thaliana 0.05 OrthoFinder
EOD07713 No alias Helicase, C-terminal; Domain of unknown function... 0.02 OrthoFinder
OT_14G02060.1 No alias Helicase, C-terminal; Domain of unknown function... 0.02 OrthoFinder
PTI_02G04280.1 No alias Helicase, C-terminal; Domain of unknown function... 0.15 OrthoFinder
TP05G00180.1 No alias Domain of unknown function DUF4217; Helicase,... 0.11 OrthoFinder
XM_002505445.1 MICPUN_67382, 67382 Helicase, C-terminal; DEAD/DEAH box helicase domain;... 0.16 OrthoFinder
XM_003059722.1 MicpuC2_18446, 18446 Helicase, C-terminal; Domain of unknown function... 0.07 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8496903.1_632 KAA8496903 ATP-dependent RNA helicase DDX55 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000154 rRNA modification IEP Enrichment
BP GO:0001510 RNA methylation IEP Enrichment
MF GO:0004674 protein serine/threonine kinase activity IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
MF GO:0008173 RNA methyltransferase activity IEP Enrichment
MF GO:0008649 rRNA methyltransferase activity IEP Enrichment
BP GO:0009116 nucleoside metabolic process IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016435 rRNA (guanine) methyltransferase activity IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
BP GO:0031167 rRNA methylation IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
BP GO:0032259 methylation IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
BP GO:0036265 RNA (guanine-N7)-methylation IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0043414 macromolecule methylation IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0070475 rRNA base methylation IEP Enrichment
BP GO:0070476 rRNA (guanine-N7)-methylation IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0140102 catalytic activity, acting on a rRNA IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
BP GO:1901657 glycosyl compound metabolic process IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR001650 Helicase_C 327 440
IPR011545 DEAD/DEAH_box_helicase_dom 97 273
IPR025313 DUF4217 515 573
No external refs found!