1. Home
  2. Species
  3. Seminavis robusta
  4. Sequence
  5. Sro6_g005380.1

Sro6_g005380.1 (Contig175.g2043)


Aliases : Contig175.g2043

Description : Fucoxanthin-chlorophyll a-c binding protein


Gene families : OG_01_0000059 (OrthoFinder) Phylogenetic Tree(s): OG0000059_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro6_g005380.1
Cluster HCCA: Cluster_108

Target Alias Description ECC score Gene Family Method Actions
EOD04043 No alias Light harvesting protein [Ensembl]. 0.18 OrthoFinder
EOD04179 No alias Chlorophyll A-B binding protein [Interproscan]. 0.17 OrthoFinder
EOD06381 No alias Light harvesting protein [Ensembl]. 0.15 OrthoFinder
EOD08888 No alias Light harvesting protein [Ensembl]. 0.11 OrthoFinder
EOD09088 No alias Light harvesting protein [Ensembl]. 0.18 OrthoFinder
EOD13767 No alias Light harvesting protein [Ensembl]. 0.16 OrthoFinder
EOD16168 No alias Chlorophyll A-B binding protein [Interproscan]. 0.08 OrthoFinder
EOD17483 No alias Light harvesting protein [Ensembl]. 0.08 OrthoFinder
EOD19212 No alias Chlorophyll A-B binding protein [Interproscan]. 0.05 OrthoFinder
EOD24357 No alias Light harvesting protein [Ensembl]. 0.08 OrthoFinder
EOD28786 No alias Light harvesting protein [Ensembl]. 0.08 OrthoFinder
EOD29856 No alias Light harvesting protein [Ensembl]. 0.08 OrthoFinder
EOD30102 No alias Light harvesting protein [Ensembl]. 0.08 OrthoFinder
EOD31146 No alias Light harvesting protein [Ensembl]. 0.11 OrthoFinder
EOD32547 No alias Light harvesting protein [Ensembl]. 0.1 OrthoFinder
EOD35505 No alias Light harvesting protein [Ensembl]. 0.13 OrthoFinder
EOD38673 No alias Lught harvesting protein [Ensembl]. 0.09 OrthoFinder
EOD41827 No alias Light harvesting protein [Ensembl]. 0.08 OrthoFinder
PTI_02G00650.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.17 OrthoFinder
PTI_02G00660.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.11 OrthoFinder
PTI_02G00670.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.17 OrthoFinder
PTI_02G00680.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.2 OrthoFinder
PTI_03G05650.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.18 OrthoFinder
PTI_15G01940.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.22 OrthoFinder
PTI_15G03790.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.22 OrthoFinder
PTI_17G01330.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.2 OrthoFinder
PTI_19G00440.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.23 OrthoFinder
PTI_20G01250.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.21 OrthoFinder
PTI_24G01550.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.2 OrthoFinder
PTI_24G01720.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.23 OrthoFinder
PTI_25G01160.1 No alias DnaJ domain; Chlorophyll A-B binding protein [Interproscan]. 0.03 OrthoFinder
SymbC1.scaffold13463.1 13463.1 Chlorophyll A-B binding protein [Interproscan]. 0.01 OrthoFinder
SymbC1.scaffold5622.1 5622.1 Chlorophyll A-B binding protein [Interproscan]. 0.01 OrthoFinder
SymbC1.scaffold75.5 75.5 Chlorophyll A-B binding protein [Interproscan]. 0.02 OrthoFinder
TP01G10180.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.3 OrthoFinder
TP02G08060.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.29 OrthoFinder
TP03G01950.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.29 OrthoFinder
TP03G01960.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.32 OrthoFinder
TP05G02100.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.33 OrthoFinder
TP20G01530.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.3 OrthoFinder
TP20G01560.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.36 OrthoFinder
TP22G01060.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.31 OrthoFinder
TP22G02570.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.29 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004427 inorganic diphosphatase activity IEP Enrichment
MF GO:0008942 nitrite reductase [NAD(P)H] activity IEP Enrichment
CC GO:0009507 chloroplast IEP Enrichment
CC GO:0009521 photosystem IEP Enrichment
CC GO:0009523 photosystem II IEP Enrichment
CC GO:0009536 plastid IEP Enrichment
CC GO:0009654 photosystem II oxygen evolving complex IEP Enrichment
MF GO:0009678 pyrophosphate hydrolysis-driven proton transmembrane transporter activity IEP Enrichment
BP GO:0010024 phytochromobilin biosynthetic process IEP Enrichment
BP GO:0010109 regulation of photosynthesis IEP Enrichment
BP GO:0010207 photosystem II assembly IEP Enrichment
MF GO:0010242 oxygen evolving activity IEP Enrichment
BP GO:0015979 photosynthesis IEP Enrichment
MF GO:0016636 oxidoreductase activity, acting on the CH-CH group of donors, iron-sulfur protein as acceptor IEP Enrichment
MF GO:0016661 oxidoreductase activity, acting on other nitrogenous compounds as donors IEP Enrichment
BP GO:0019684 photosynthesis, light reaction IEP Enrichment
CC GO:0019898 extrinsic component of membrane IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
BP GO:0042548 regulation of photosynthesis, light reaction IEP Enrichment
BP GO:0042549 photosystem II stabilization IEP Enrichment
BP GO:0043467 regulation of generation of precursor metabolites and energy IEP Enrichment
MF GO:0046422 violaxanthin de-epoxidase activity IEP Enrichment
MF GO:0046857 oxidoreductase activity, acting on other nitrogenous compounds as donors, with NAD or NADP as acceptor IEP Enrichment
MF GO:0050897 cobalt ion binding IEP Enrichment
BP GO:0051202 phytochromobilin metabolic process IEP Enrichment
CC GO:0098796 membrane protein complex IEP Enrichment
MF GO:0098809 nitrite reductase activity IEP Enrichment
CC GO:1902494 catalytic complex IEP Enrichment
CC GO:1990204 oxidoreductase complex IEP Enrichment
InterPro domains Description Start Stop
IPR022796 Chloroa_b-bind 35 190
No external refs found!