Sro691_g187730.1 (Contig1133.g10868)

Aliases : Contig1133.g10868

Description : Probable U3 small nucleolar RNA-associated protein 11

Gene families : OG_01_0003512 (OrthoFinder) Phylogenetic Tree(s): OG0003512_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sro691_g187730.1
Cluster	HCCA: Cluster_177

Target	Alias	Description	ECC score	Gene Family Method
Cpa\|evm.model.tig00020903.46	tig00020903_g15115.t1	Protein biosynthesis.cytosolic ribosome.small subunit...	0.05	OrthoFinder
Cz08g18060.t1	No alias	Small-subunit processome, Utp11 [Interproscan].	0.02	OrthoFinder
OT_06G01550.1	No alias	Small-subunit processome, Utp11 [Interproscan].	0.02	OrthoFinder
PTI_13G01880.1	No alias	Small-subunit processome, Utp11 [Interproscan].	0.06	OrthoFinder
TP20G00740.1	No alias	Small-subunit processome, Utp11 [Interproscan].	0.03	OrthoFinder
Transcript_contig_58267	58267	Small-subunit processome, Utp11 [Interproscan].	0.01	OrthoFinder

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006364	rRNA processing	IEA	Interproscan
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016072	rRNA metabolic process	None	Extended
CC	GO:0030684	preribosome	None	Extended
CC	GO:0032040	small-subunit processome	IEA	Interproscan
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	Enrichment
CC	GO:0005730	nucleolus	IEP	Enrichment
BP	GO:0006351	transcription, DNA-templated	IEP	Enrichment
MF	GO:0008168	methyltransferase activity	IEP	Enrichment
MF	GO:0016741	transferase activity, transferring one-carbon groups	IEP	Enrichment
BP	GO:0032774	RNA biosynthetic process	IEP	Enrichment
BP	GO:0097659	nucleic acid-templated transcription	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR007144	SSU_processome_Utp11	14	277

External Links

No external refs found!