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  5. Sro63_g035860.1

Sro63_g035860.1 (Contig2778.g22351)


Aliases : Contig2778.g22351

Description : Proteasome subunit alpha


Gene families : OG_01_0002755 (OrthoFinder) Phylogenetic Tree(s): OG0002755_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro63_g035860.1
Cluster HCCA: Cluster_146

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00021357.40 tig00021357_g20766.t1 Proteasome subunit alpha type-2-A OS=Arabidopsis thaliana 0.18 OrthoFinder
Cre08.g373250 30773949, POA2 Protein degradation.26S proteasome.20S core... 0.25 OrthoFinder
Cz05g10060.t1 No alias Proteasome, subunit alpha/beta; Proteasome... 0.18 OrthoFinder
Dusal.0724s00005.1 33190221 Proteasome, subunit alpha/beta; Proteasome... 0.03 OrthoFinder
EOD39539 No alias Proteasome, subunit alpha/beta [Interproscan]. 0.17 OrthoFinder
OT_06G00220.1 No alias Proteasome, subunit alpha/beta [Interproscan]. 0.16 OrthoFinder
PTI_25G01000.1 No alias Proteasome, subunit alpha/beta; Proteasome... 0.11 OrthoFinder
TP22G01710.1 No alias Proteasome, subunit alpha/beta; Proteasome... 0.26 OrthoFinder
Transcript_contig_58673 58673 Proteasome alpha-subunit, N-terminal domain; Proteasome,... 0.01 OrthoFinder
Vocar.0043s0030.1 32886890 Proteasome alpha-subunit, N-terminal domain; Proteasome,... 0.07 OrthoFinder
XM_002500738.1 MICPUN_56599, 56599 Proteasome, subunit alpha/beta [Interproscan]. 0.19 OrthoFinder
XM_003059320.1 MicpuC2_49610, 49610 Proteasome, subunit alpha/beta [Interproscan]. 0.13 OrthoFinder
lcl|BLLF01002018.1_cds_GFH22338.1_16815 HaLaN_19789, GFH22338 Proteasome subunit alpha type 0.04 OrthoFinder
lcl|LHPG02000012.1_cds_PRW44892.1_1655 PRW44892 20S proteasome alpha subunit B 0.06 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498323.1_7276 KAA8498323 Proteasome subunit alpha type-2-A 0.17 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0004175 endopeptidase activity IEA Interproscan
MF GO:0004298 threonine-type endopeptidase activity IEA Interproscan
CC GO:0005839 proteasome core complex IEA Interproscan
BP GO:0006511 ubiquitin-dependent protein catabolic process IEA Interproscan
CC GO:0019773 proteasome core complex, alpha-subunit complex IEA Interproscan
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
CC GO:0000502 proteasome complex IEP Enrichment
MF GO:0004190 aspartic-type endopeptidase activity IEP Enrichment
MF GO:0004843 thiol-dependent deubiquitinase IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
BP GO:0006405 RNA export from nucleus IEP Enrichment
BP GO:0006406 mRNA export from nucleus IEP Enrichment
BP GO:0006913 nucleocytoplasmic transport IEP Enrichment
MF GO:0008234 cysteine-type peptidase activity IEP Enrichment
MF GO:0008242 omega peptidase activity IEP Enrichment
CC GO:0008541 proteasome regulatory particle, lid subcomplex IEP Enrichment
BP GO:0009116 nucleoside metabolic process IEP Enrichment
BP GO:0009894 regulation of catabolic process IEP Enrichment
BP GO:0015931 nucleobase-containing compound transport IEP Enrichment
BP GO:0016043 cellular component organization IEP Enrichment
BP GO:0016579 protein deubiquitination IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Enrichment
BP GO:0022607 cellular component assembly IEP Enrichment
CC GO:0030117 membrane coat IEP Enrichment
CC GO:0030118 clathrin coat IEP Enrichment
CC GO:0030120 vesicle coat IEP Enrichment
CC GO:0030125 clathrin vesicle coat IEP Enrichment
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEP Enrichment
CC GO:0030132 clathrin coat of coated pit IEP Enrichment
MF GO:0030234 enzyme regulator activity IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
BP GO:0034622 cellular protein-containing complex assembly IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
BP GO:0042176 regulation of protein catabolic process IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
BP GO:0043248 proteasome assembly IEP Enrichment
BP GO:0043933 protein-containing complex subunit organization IEP Enrichment
BP GO:0046907 intracellular transport IEP Enrichment
BP GO:0050657 nucleic acid transport IEP Enrichment
BP GO:0050658 RNA transport IEP Enrichment
BP GO:0051028 mRNA transport IEP Enrichment
BP GO:0051168 nuclear export IEP Enrichment
BP GO:0051169 nuclear transport IEP Enrichment
BP GO:0051236 establishment of RNA localization IEP Enrichment
BP GO:0051246 regulation of protein metabolic process IEP Enrichment
BP GO:0051641 cellular localization IEP Enrichment
BP GO:0051649 establishment of localization in cell IEP Enrichment
BP GO:0065003 protein-containing complex assembly IEP Enrichment
MF GO:0070001 aspartic-type peptidase activity IEP Enrichment
BP GO:0070646 protein modification by small protein removal IEP Enrichment
BP GO:0070647 protein modification by small protein conjugation or removal IEP Enrichment
BP GO:0071702 organic substance transport IEP Enrichment
BP GO:0071705 nitrogen compound transport IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
MF GO:0098772 molecular function regulator IEP Enrichment
CC GO:0098797 plasma membrane protein complex IEP Enrichment
MF GO:0101005 deubiquitinase activity IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
BP GO:1901657 glycosyl compound metabolic process IEP Enrichment
CC GO:1905368 peptidase complex IEP Enrichment
CC GO:1905369 endopeptidase complex IEP Enrichment
InterPro domains Description Start Stop
IPR000426 Proteasome_asu_N 6 28
IPR001353 Proteasome_sua/b 29 214
No external refs found!