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  5. Sro612_g175490.1

Sro612_g175490.1 (Contig276.g3567)


Aliases : Contig276.g3567

Description : Helicase


Gene families : OG_01_0000030 (OrthoFinder) Phylogenetic Tree(s): OG0000030_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro612_g175490.1
Cluster HCCA: Cluster_242

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020553.111 tig00020553_g10597.t1 No description available 0.02 OrthoFinder
PTI_05G04000.1 No alias Helicase-associated [Interproscan]. 0.06 OrthoFinder
TP01G04700.1 No alias Helicase-associated [Interproscan]. 0.01 OrthoFinder
TP09G02680.1 No alias Helicase-associated [Interproscan]. 0.04 OrthoFinder
TP14G03000.1 No alias Helicase-associated [Interproscan]. 0.02 OrthoFinder
XM_003056758.1 MicpuC2_56237, 56237 Helicase-associated [Interproscan]. 0.01 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0008033 tRNA processing IEP Enrichment
MF GO:0008146 sulfotransferase activity IEP Enrichment
MF GO:0008238 exopeptidase activity IEP Enrichment
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP Enrichment
MF GO:0016782 transferase activity, transferring sulphur-containing groups IEP Enrichment
MF GO:0016805 dipeptidase activity IEP Enrichment
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
MF GO:0050660 flavin adenine dinucleotide binding IEP Enrichment
MF GO:0140101 catalytic activity, acting on a tRNA IEP Enrichment
InterPro domains Description Start Stop
IPR005114 Helicase_assoc 89 160
IPR005114 Helicase_assoc 21 78
IPR005114 Helicase_assoc 176 237
No external refs found!