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  5. Sro546_g163990.1

Sro546_g163990.1 (Contig4069.g31176)


Aliases : Contig4069.g31176

Description : Of chromosomes protein 3


Gene families : OG_01_0001808 (OrthoFinder) Phylogenetic Tree(s): OG0001808_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro546_g163990.1
Cluster HCCA: Cluster_220

Target Alias Description ECC score Gene Family Method Actions
Cre10.g445650 30790176, SMC3 Cell cycle.mitosis and meiosis.sister chromatid... 0.03 OrthoFinder
Dusal.0573s00002.1 33189042 RecF/RecN/SMC, N-terminal; SMCs flexible hinge [Interproscan]. 0.01 OrthoFinder
EOD06899 No alias Hypothetical protein [Ensembl]. 0.04 OrthoFinder
OT_09G02100.1 No alias RecF/RecN/SMC, N-terminal; SMCs flexible hinge [Interproscan]. 0.04 OrthoFinder
PTI_24G00330.1 No alias RecF/RecN/SMC, N-terminal; SMCs flexible hinge [Interproscan]. 0.04 OrthoFinder
Transcript_contig_54820 54820 RecF/RecN/SMC, N-terminal; SMCs flexible hinge [Interproscan]. 0.01 OrthoFinder
XM_002508766.1 MICPUN_85842, 85842 Condensin complex component 0.02 OrthoFinder
XM_003056761.1 MicpuC2_25650, 25650 Condensin complex component 0.02 OrthoFinder
lcl|BLLF01000280.1_cds_GFH10012.1_4489 HaLaN_05254, GFH10012 SMC hinge domain-containing protein 0.01 OrthoFinder
lcl|BLLF01005153.1_cds_GFH30800.1_25277 HaLaN_29720, GFH30800 Structural maintenance of chromosomes protein 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0005694 chromosome IEA Interproscan
BP GO:0051276 chromosome organization IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000030 mannosyltransferase activity IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
BP GO:0006259 DNA metabolic process IEP Enrichment
BP GO:0006260 DNA replication IEP Enrichment
BP GO:0006281 DNA repair IEP Enrichment
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Enrichment
BP GO:0006950 response to stress IEP Enrichment
BP GO:0006974 cellular response to DNA damage stimulus IEP Enrichment
MF GO:0008081 phosphoric diester hydrolase activity IEP Enrichment
MF GO:0019899 enzyme binding IEP Enrichment
BP GO:0019941 modification-dependent protein catabolic process IEP Enrichment
MF GO:0031625 ubiquitin protein ligase binding IEP Enrichment
BP GO:0033554 cellular response to stress IEP Enrichment
MF GO:0042578 phosphoric ester hydrolase activity IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0044265 cellular macromolecule catabolic process IEP Enrichment
MF GO:0044389 ubiquitin-like protein ligase binding IEP Enrichment
BP GO:0050896 response to stimulus IEP Enrichment
BP GO:0051716 cellular response to stimulus IEP Enrichment
InterPro domains Description Start Stop
IPR003395 RecF/RecN/SMC_N 2 1216
IPR010935 SMC_hinge 527 640
No external refs found!