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  5. Sro545_g163840.1

Sro545_g163840.1 (Contig1180.g11227)


Aliases : Contig1180.g11227

Description : Splicing factor CWC22


Gene families : OG_01_0003357 (OrthoFinder) Phylogenetic Tree(s): OG0003357_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro545_g163840.1
Cluster HCCA: Cluster_149

Target Alias Description ECC score Gene Family Method Actions
Cre06.g259800 30780079, CWC22 No description available 0.01 OrthoFinder
Cz09g21040.t1 No alias Initiation factor eIF-4 gamma, MA3 [Interproscan]. 0.02 OrthoFinder
XM_003061729.1 MicpuC2_51319, 51319 MIF4G and MA3 domain-containing protein 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Enrichment
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Enrichment
BP GO:0000398 mRNA splicing, via spliceosome IEP Enrichment
MF GO:0003682 chromatin binding IEP Enrichment
MF GO:0003743 translation initiation factor activity IEP Enrichment
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0004527 exonuclease activity IEP Enrichment
MF GO:0004843 thiol-dependent deubiquitinase IEP Enrichment
CC GO:0005681 spliceosomal complex IEP Enrichment
BP GO:0006366 transcription by RNA polymerase II IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006397 mRNA processing IEP Enrichment
BP GO:0006413 translational initiation IEP Enrichment
BP GO:0006464 cellular protein modification process IEP Enrichment
BP GO:0006473 protein acetylation IEP Enrichment
BP GO:0006474 N-terminal protein amino acid acetylation IEP Enrichment
BP GO:0006508 proteolysis IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
MF GO:0008242 omega peptidase activity IEP Enrichment
BP GO:0008380 RNA splicing IEP Enrichment
MF GO:0008408 3'-5' exonuclease activity IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016071 mRNA metabolic process IEP Enrichment
BP GO:0016579 protein deubiquitination IEP Enrichment
BP GO:0017196 N-terminal peptidyl-methionine acetylation IEP Enrichment
BP GO:0018206 peptidyl-methionine modification IEP Enrichment
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Enrichment
CC GO:0031248 protein acetyltransferase complex IEP Enrichment
BP GO:0031365 N-terminal protein amino acid modification IEP Enrichment
CC GO:0031414 N-terminal protein acetyltransferase complex IEP Enrichment
CC GO:0031417 NatC complex IEP Enrichment
MF GO:0034062 5'-3' RNA polymerase activity IEP Enrichment
BP GO:0036211 protein modification process IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
BP GO:0043412 macromolecule modification IEP Enrichment
BP GO:0043543 protein acylation IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
MF GO:0070403 NAD+ binding IEP Enrichment
BP GO:0070646 protein modification by small protein removal IEP Enrichment
BP GO:0070647 protein modification by small protein conjugation or removal IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0097747 RNA polymerase activity IEP Enrichment
MF GO:0101005 deubiquitinase activity IEP Enrichment
CC GO:1902493 acetyltransferase complex IEP Enrichment
CC GO:1990234 transferase complex IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR003890 MIF4G-like_typ-3 106 288
IPR003891 Initiation_fac_eIF4g_MI 407 513
No external refs found!