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  5. Sro545_g163780.1

Sro545_g163780.1 (Contig1180.g11221)


Aliases : Contig1180.g11221

Description : S10B homolog B


Gene families : OG_01_0001839 (OrthoFinder) Phylogenetic Tree(s): OG0001839_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro545_g163780.1
Cluster HCCA: Cluster_233

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000718.6 tig00000718_g3683.t1 Protein degradation.26S proteasome.regulatory... 0.16 OrthoFinder
Cre17.g710150 30782016, RPT4 Protein degradation.26S proteasome.regulatory... 0.3 OrthoFinder
Cz03g32090.t1 No alias ATPase, AAA-type, core; AAA ATPase, AAA+ lid domain... 0.08 OrthoFinder
Dusal.0070s00030.1 33189323 ATPase, AAA-type, core; AAA ATPase, AAA+ lid domain;... 0.03 OrthoFinder
EOD05789 No alias Proteasomal ATPase OB C-terminal domain; AAA ATPase,... 0.19 OrthoFinder
OT_03G03400.1 No alias Proteasomal ATPase OB C-terminal domain; ATPase,... 0.09 OrthoFinder
PTI_06G01270.1 No alias Proteasomal ATPase OB C-terminal domain; ATPase,... 0.34 OrthoFinder
TP12G00010.1 No alias Proteasomal ATPase OB C-terminal domain; ATPase,... 0.3 OrthoFinder
Vocar.0021s0037.1 32896036 Proteasomal ATPase OB C-terminal domain; ATPase,... 0.08 OrthoFinder
XM_002499385.1 MICPUN_78817, 78817 Proteasomal ATPase 0.09 OrthoFinder
XM_003055727.1 MicpuC2_70911, 70911 Proteasomal ATPase 0.07 OrthoFinder
lcl|BLLF01001377.1_cds_GFH18904.1_13381 HaLaN_15778, GFH18904 26S proteasome regulatory subunit 0.04 OrthoFinder
lcl|BLLF01001377.1_cds_GFH18905.1_13382 HaLaN_15779, GFH18905 AAA domain-containing protein 0.02 OrthoFinder
lcl|LHPG02000004.1_cds_PRW59372.1_7107 PRW59372 26S proteasome regulatory ATPase RPT4 0.07 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494848.1_3378 KAA8494848 26S protease regulatory subunit 10B-like A 0.12 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000502 proteasome complex IEP Enrichment
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Enrichment
MF GO:0003824 catalytic activity IEP Enrichment
MF GO:0004175 endopeptidase activity IEP Enrichment
MF GO:0004190 aspartic-type endopeptidase activity IEP Enrichment
MF GO:0004298 threonine-type endopeptidase activity IEP Enrichment
MF GO:0005200 structural constituent of cytoskeleton IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005839 proteasome core complex IEP Enrichment
BP GO:0006405 RNA export from nucleus IEP Enrichment
BP GO:0006406 mRNA export from nucleus IEP Enrichment
BP GO:0006508 proteolysis IEP Enrichment
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
BP GO:0006913 nucleocytoplasmic transport IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
MF GO:0008233 peptidase activity IEP Enrichment
CC GO:0008537 proteasome activator complex IEP Enrichment
CC GO:0008541 proteasome regulatory particle, lid subcomplex IEP Enrichment
BP GO:0009056 catabolic process IEP Enrichment
BP GO:0009057 macromolecule catabolic process IEP Enrichment
BP GO:0009894 regulation of catabolic process IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
BP GO:0015931 nucleobase-containing compound transport IEP Enrichment
BP GO:0016043 cellular component organization IEP Enrichment
BP GO:0016579 protein deubiquitination IEP Enrichment
MF GO:0016787 hydrolase activity IEP Enrichment
MF GO:0016853 isomerase activity IEP Enrichment
MF GO:0016859 cis-trans isomerase activity IEP Enrichment
BP GO:0019538 protein metabolic process IEP Enrichment
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP Enrichment
BP GO:0019941 modification-dependent protein catabolic process IEP Enrichment
BP GO:0022607 cellular component assembly IEP Enrichment
MF GO:0030234 enzyme regulator activity IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
BP GO:0034622 cellular protein-containing complex assembly IEP Enrichment
BP GO:0042176 regulation of protein catabolic process IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
BP GO:0043248 proteasome assembly IEP Enrichment
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Enrichment
BP GO:0043933 protein-containing complex subunit organization IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0044248 cellular catabolic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0044265 cellular macromolecule catabolic process IEP Enrichment
BP GO:0050657 nucleic acid transport IEP Enrichment
BP GO:0050658 RNA transport IEP Enrichment
BP GO:0051028 mRNA transport IEP Enrichment
BP GO:0051168 nuclear export IEP Enrichment
BP GO:0051169 nuclear transport IEP Enrichment
BP GO:0051236 establishment of RNA localization IEP Enrichment
BP GO:0051246 regulation of protein metabolic process IEP Enrichment
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Enrichment
BP GO:0065003 protein-containing complex assembly IEP Enrichment
MF GO:0070001 aspartic-type peptidase activity IEP Enrichment
MF GO:0070003 threonine-type peptidase activity IEP Enrichment
BP GO:0070646 protein modification by small protein removal IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
MF GO:0098772 molecular function regulator IEP Enrichment
MF GO:0140096 catalytic activity, acting on a protein IEP Enrichment
BP GO:1901564 organonitrogen compound metabolic process IEP Enrichment
BP GO:1901575 organic substance catabolic process IEP Enrichment
CC GO:1905368 peptidase complex IEP Enrichment
CC GO:1905369 endopeptidase complex IEP Enrichment
InterPro domains Description Start Stop
IPR041569 AAA_lid_3 349 393
IPR032501 Prot_ATP_ID_OB 80 135
IPR003959 ATPase_AAA_core 194 326
No external refs found!