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  5. Sro536_g162240.1

Sro536_g162240.1 (Contig299.g3954)


Aliases : Contig299.g3954

Description : RRP12-like protein


Gene families : OG_01_0002874 (OrthoFinder) Phylogenetic Tree(s): OG0002874_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro536_g162240.1
Cluster HCCA: Cluster_51

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020554.42 tig00020554_g10824.t1 No description available 0.09 OrthoFinder
Cre19.g751197 30778316 No description available 0.1 OrthoFinder
Cz04g06250.t1 No alias Uncharacterised domain NUC173 [Interproscan]. 0.21 OrthoFinder
Dusal.0675s00008.1 33202440 Uncharacterised domain NUC173 [Interproscan]. 0.03 OrthoFinder
Dusal.0675s00009.1 33202444 Hypothetical protein 0.03 OrthoFinder
EOD33147 No alias Uncharacterised domain NUC173 [Interproscan]. 0.15 OrthoFinder
OT_15G01680.1 No alias Uncharacterised domain NUC173 [Interproscan]. 0.09 OrthoFinder
PTI_01G02060.1 No alias Uncharacterised domain NUC173 [Interproscan]. 0.35 OrthoFinder
SymbC1.scaffold480.16 480.16 Uncharacterised domain NUC173 [Interproscan]. 0.01 OrthoFinder
TP03G00440.1 No alias Uncharacterised domain NUC173 [Interproscan]. 0.1 OrthoFinder
Transcript_contig_55853 55853 Uncharacterised domain NUC173 [Interproscan]. 0.07 OrthoFinder
Vocar.0006s0029.1 32894231 Uncharacterised domain NUC173 [Interproscan]. 0.04 OrthoFinder
XM_002504930.1 MICPUN_62622, 62622 Uncharacterised domain NUC173 [Interproscan]. 0.16 OrthoFinder
XM_003060590.1 MicpuC2_40902, 40902 Uncharacterised domain NUC173 [Interproscan]. 0.05 OrthoFinder
lcl|BLLF01003016.1_cds_GFH26084.1_20561 HaLaN_24171, GFH26084 NUC173 domain-containing protein 0.01 OrthoFinder
lcl|LHPG02000002.1_cds_PRW60392.1_4606 PRW60392 ARM repeat superfamily 0.22 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8497894.1_6847 KAA8497894 Putative ribosomal RNA-processing protein 12 0.08 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003724 RNA helicase activity IEP Enrichment
MF GO:0004386 helicase activity IEP Enrichment
MF GO:0004674 protein serine/threonine kinase activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
CC GO:0005732 sno(s)RNA-containing ribonucleoprotein complex IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
MF GO:0008094 ATPase, acting on DNA IEP Enrichment
MF GO:0008134 transcription factor binding IEP Enrichment
BP GO:0009116 nucleoside metabolic process IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016887 ATPase IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0030688 preribosome, small subunit precursor IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
CC GO:0034457 Mpp10 complex IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043228 non-membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
BP GO:1901657 glycosyl compound metabolic process IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR012978 Uncharacterised_NUC173 454 653
No external refs found!