1. Home
  2. Species
  3. Seminavis robusta
  4. Sequence
  5. Sro52_g031220.1

Sro52_g031220.1 (Contig3190.g25205)


Aliases : Contig3190.g25205

Description : Leucine rich repeat


Gene families : OG_01_0000035 (OrthoFinder) Phylogenetic Tree(s): OG0000035_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro52_g031220.1
Cluster HCCA: Cluster_64

Target Alias Description ECC score Gene Family Method Actions
Sro1086_g239740.1 Contig2506.g20510 Leucine Rich Repeat 0.01 OrthoFinder
Sro10_g008370.1 Contig1.g61 Leucine rich repeat 0.03 OrthoFinder
Sro1150_g246700.1 Contig603.g7507 Leucine Rich Repeat 0.02 OrthoFinder
Sro1236_g255140.1 Contig1374.g12617 Leucine Rich Repeat 0.05 OrthoFinder
Sro1331_g263510.1 Contig1733.g15457 Leucine rich repeat N-terminal domain 0.06 OrthoFinder
Sro144_g067010.1 Contig3873.g29800 LRR receptor-like serine threonine-protein kinase 0.02 OrthoFinder
Sro1460_g274600.1 Contig332.g4412 Leucine Rich Repeat 0.01 OrthoFinder
Sro1468_g275160.1 Contig3834.g29482 Leucine Rich Repeat 0.03 OrthoFinder
Sro1543_g281110.1 Contig1530.g13907 Leucine Rich Repeat 0.03 OrthoFinder
Sro1581_g283800.1 Contig585.g7355 Leucine Rich Repeat 0.03 OrthoFinder
Sro1745_g294930.1 Contig2557.g20796 LRR receptor-like serine threonine-protein kinase 0.02 OrthoFinder
Sro1781_g297090.1 Contig230.g2769 Receptor-like protein kinase precursor 0.03 OrthoFinder
Sro2158_g316930.1 Contig3584.g27687 Leucine Rich Repeat 0.02 OrthoFinder
Sro242_g096620.1 Contig554.g7080 Leucine Rich Repeat 0.03 OrthoFinder
Sro273_g105050.1 Contig4205.g31986 LRR receptor-like serine threonine-protein kinase 0.03 OrthoFinder
Sro283_g107690.1 Contig4255.g32200 LRR receptor-like serine threonine-protein kinase At4g08850 0.03 OrthoFinder
Sro283_g107800.1 Contig4255.g32211 Leucine Rich Repeat 0.03 OrthoFinder
Sro283_g107810.1 Contig4255.g32212 Leucine Rich Repeat 0.02 OrthoFinder
Sro322_g117050.1 Contig1229.g11543 LRR receptor-like serine threonine-protein kinase 0.03 OrthoFinder
Sro32_g020780.1 Contig3715.g28551 Leucine Rich Repeat 0.06 OrthoFinder
Sro32_g020790.1 Contig3715.g28552 LRR receptor-like serine threonine-protein kinase At4g08850-like 0.02 OrthoFinder
Sro337_g120550.1 Contig2800.g22513 STYKc 0.02 OrthoFinder
Sro4136_g353110.1 Contig3023.g24105 LRR receptor-like serine threonine-protein kinase 0.03 OrthoFinder
Sro449_g145320.1 Contig3482.g27002 Leucine Rich Repeat 0.05 OrthoFinder
Sro45_g026870.1 Contig2311.g19069 Leucine Rich Repeat 0.03 OrthoFinder
Sro460_g147480.1 Contig3843.g29573 Leucine Rich Repeat 0.03 OrthoFinder
Sro469_g149290.1 Contig2361.g19379 Leucine Rich Repeat 0.03 OrthoFinder
Sro52_g030940.1 Contig3190.g25177 Leucine Rich Repeat 0.03 OrthoFinder
Sro548_g164490.1 Contig1714.g15329 LRR receptor-like serine threonine-protein kinase 0.03 OrthoFinder
Sro558_g166310.1 Contig3624.g28029 Leucine Rich Repeat 0.03 OrthoFinder
Sro558_g166320.1 Contig3624.g28030 Leucine Rich Repeat 0.02 OrthoFinder
Sro638_g179650.1 Contig628.g7628 Leucine Rich Repeat 0.01 OrthoFinder
Sro74_g040710.1 Contig4700.g34933 Leucine Rich Repeat 0.04 OrthoFinder
Sro755_g197630.1 Contig3465.g26898 Leucine Rich Repeat 0.01 OrthoFinder
Sro86_g045610.1 Contig2999.g23839 Leucine Rich Repeat 0.04 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000160 phosphorelay signal transduction system IEP Enrichment
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0003700 DNA-binding transcription factor activity IEP Enrichment
BP GO:0006355 regulation of transcription, DNA-templated IEP Enrichment
BP GO:0007165 signal transduction IEP Enrichment
BP GO:0009889 regulation of biosynthetic process IEP Enrichment
BP GO:0010468 regulation of gene expression IEP Enrichment
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Enrichment
CC GO:0018995 host cellular component IEP Enrichment
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0019222 regulation of metabolic process IEP Enrichment
BP GO:0031323 regulation of cellular metabolic process IEP Enrichment
BP GO:0031326 regulation of cellular biosynthetic process IEP Enrichment
CC GO:0033643 host cell part IEP Enrichment
CC GO:0033646 host intracellular part IEP Enrichment
CC GO:0033647 host intracellular organelle IEP Enrichment
CC GO:0033648 host intracellular membrane-bounded organelle IEP Enrichment
CC GO:0042025 host cell nucleus IEP Enrichment
MF GO:0043565 sequence-specific DNA binding IEP Enrichment
BP GO:0050789 regulation of biological process IEP Enrichment
BP GO:0050794 regulation of cellular process IEP Enrichment
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Enrichment
BP GO:0051252 regulation of RNA metabolic process IEP Enrichment
BP GO:0060255 regulation of macromolecule metabolic process IEP Enrichment
BP GO:0065007 biological regulation IEP Enrichment
BP GO:0080090 regulation of primary metabolic process IEP Enrichment
MF GO:0140110 transcription regulator activity IEP Enrichment
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Enrichment
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Enrichment
BP GO:2001141 regulation of RNA biosynthetic process IEP Enrichment

No InterPro domains available for this sequence

No external refs found!