1. Home
  2. Species
  3. Seminavis robusta
  4. Sequence
  5. Sro52_g031190.1

Sro52_g031190.1 (Contig3190.g25202)


Aliases : Contig3190.g25202

Description : Inherit from COG: Retrotransposon protein


Gene families : OG_01_0000925 (OrthoFinder) Phylogenetic Tree(s): OG0000925_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro52_g031190.1
Cluster HCCA: Cluster_75

Target Alias Description ECC score Gene Family Method Actions
Sro1116_g242840.1 Contig365.g4924 Retrotransposon protein 0.06 OrthoFinder
Sro22_g015530.1 Contig426.g5777 Pol polyprotein 0.07 OrthoFinder
Sro2664_g334090.1 Contig38.g226 Hypothetical protein 0.07 OrthoFinder
Sro3227_g345610.1 Contig1050.g10345 Inherit from COG: Retrotransposon protein 0.04 OrthoFinder
Sro614_g175810.1 Contig1589.g14435 Retrotransposon protein 0.05 OrthoFinder
Sro704_g190250.1 Contig1755.g15586 Retrotransposon protein 0.09 OrthoFinder
Sro788_g202490.1 Contig3902.g29930 Retrotransposon protein 0.05 OrthoFinder
Sro863_g212540.1 Contig37.g223 Retrotransposon protein 0.05 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0015074 DNA integration IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001584 Integrase_cat-core 113 194
IPR041588 Integrase_H2C2 22 77
No external refs found!