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  5. Sro524_g159890.1

Sro524_g159890.1 (Contig202.g2386)


Aliases : Contig202.g2386

Description : Receptor homology region, transmembrane domain- and RING domain-containing protein


Gene families : OG_01_0000005 (OrthoFinder) Phylogenetic Tree(s): OG0000005_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro524_g159890.1
Cluster HCCA: Cluster_333

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000093.104 tig00000093_g3533.t1 Protein degradation.peptide tagging.Ubiquitin... 0.01 OrthoFinder
Cpa|evm.model.tig00020684.6 tig00020684_g12854.t1 Protein degradation.peptide tagging.Ubiquitin... 0.01 OrthoFinder
Cpa|evm.model.tig00020943.22 tig00020943_g16264.t1 Protein degradation.peptide tagging.Ubiquitin... 0.02 OrthoFinder
Cz09g32200.t1 No alias Zinc finger, RING-type [Interproscan]. 0.02 OrthoFinder
Cz10g28200.t1 No alias Zinc finger, RING-type [Interproscan]. 0.03 OrthoFinder
EOD04076 No alias Zinc finger, RING-type [Interproscan]. 0.03 OrthoFinder
PTI_09G00300.1 No alias Zinc finger, RING-type [Interproscan]. 0.02 OrthoFinder
Sro1229_g254480.1 Contig3654.g28212 Protein ligase Arkadia 0.03 OrthoFinder
SymbC1.scaffold1296.6 1296.6 Zinc finger, RING-type [Interproscan]. 0.01 OrthoFinder
SymbC1.scaffold2499.3 2499.3 Ankyrin repeats (many copies); Ankyrin repeat-containing... 0.02 OrthoFinder
SymbC1.scaffold75.16 75.16 Zinc finger, RING-type [Interproscan]. 0.03 OrthoFinder
TP07G01800.1 No alias Zinc finger, RING-type [Interproscan]. 0.02 OrthoFinder
Transcript_contig_56851 56851 Zinc finger, RING-type [Interproscan]. 0.01 OrthoFinder
XM_002505075.1 MICPUN_62302, 62302 E3 ubiquitin-protein ligase RNF126-like, zinc-ribbon;... 0.02 OrthoFinder
lcl|BLLF01001468.1_cds_GFH19468.1_13945 HaLaN_16418, GFH19468 RING-type domain-containing protein 0.01 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEP Enrichment
MF GO:0016409 palmitoyltransferase activity IEP Enrichment
InterPro domains Description Start Stop
IPR001841 Znf_RING 347 374
No external refs found!