1. Home
  2. Species
  3. Seminavis robusta
  4. Sequence
  5. Sro51_chlor_g029670.1

Sro51_chlor_g029670.1 (Rps13)


Aliases : Rps13

Description : Rps13


Gene families : OG_01_0000909 (OrthoFinder) Phylogenetic Tree(s): OG0000909_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro51_chlor_g029670.1
Cluster HCCA: Cluster_109

Target Alias Description ECC score Gene Family Method Actions
Cre06.g288400 30779477, MRPS11 30S ribosomal protein S11, chloroplastic OS=Chlorella vulgaris 0.03 OrthoFinder
Cre12.g493950 30792612, PRPS13 Protein biosynthesis.organelle translation... 0.09 OrthoFinder
Cre16.g674350 30777293, MRPS13 No description available 0.05 OrthoFinder
Cz02g19040.t1 No alias Ribosomal protein S13 [Interproscan]. 0.04 OrthoFinder
CzCPg00340.t1 No alias Ribosomal protein S11 [Interproscan]. 0.11 OrthoFinder
Dusal.1916s00001.1 33187808 Ribosomal protein S13 [Interproscan]. 0.02 OrthoFinder
EOD30026 No alias Ribosomal protein S11 [Interproscan]. 0.03 OrthoFinder
OT_03G05840.1 No alias Ribosomal protein S13 [Interproscan]. 0.1 OrthoFinder
TPCG02670.1 No alias Ribosomal protein S11 [Interproscan]. 0.04 OrthoFinder
Transcript_contig_57743 57743 Ribosomal protein S13 [Interproscan]. 0.02 OrthoFinder
Transcript_contig_80871 80871 Ribosomal protein S11 [Interproscan]. 0.05 OrthoFinder
Vocar.0001s1404.1 32884152 Ribosomal protein S11 [Interproscan]. 0.01 OrthoFinder
XM_002506993.1 MICPUN_89270, 89270 Ribosomal protein S13, chloroplast precursor (RPS13) 0.1 OrthoFinder
XM_003054733.1 MicpuC2_45129, 45129 Ribosomal protein S13, chloroplast precursor (RPS13) 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0003678 DNA helicase activity IEP Enrichment
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0003954 NADH dehydrogenase activity IEP Enrichment
MF GO:0003955 NAD(P)H dehydrogenase (quinone) activity IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
MF GO:0008137 NADH dehydrogenase (ubiquinone) activity IEP Enrichment
CC GO:0009512 cytochrome b6f complex IEP Enrichment
MF GO:0015002 obsolete heme-copper terminal oxidase activity IEP Enrichment
CC GO:0015934 large ribosomal subunit IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP Enrichment
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP Enrichment
MF GO:0016779 nucleotidyltransferase activity IEP Enrichment
BP GO:0017038 protein import IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
CC GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain IEP Enrichment
MF GO:0034062 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
CC GO:0044391 ribosomal subunit IEP Enrichment
MF GO:0050136 NADH dehydrogenase (quinone) activity IEP Enrichment
CC GO:0070069 cytochrome complex IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
MF GO:0097747 RNA polymerase activity IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
InterPro domains Description Start Stop
IPR001892 Ribosomal_S13 3 66
No external refs found!