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  5. Sro51_chlor_g029640.1

Sro51_chlor_g029640.1 (Rps5)


Aliases : Rps5

Description : Rps5


Gene families : OG_01_0000781 (OrthoFinder) Phylogenetic Tree(s): OG0000781_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro51_chlor_g029640.1
Cluster HCCA: Cluster_109

Target Alias Description ECC score Gene Family Method Actions
Cre09.g407100 30780731 No description available 0.05 OrthoFinder
Cre16.g659950 30778100, PRPS5 Protein biosynthesis.organelle translation... 0.06 OrthoFinder
Cz12g28110.t1 No alias Ribosomal protein S5, C-terminal; Ribosomal protein S5,... 0.06 OrthoFinder
OT_10G02160.1 No alias Ribosomal protein S5, C-terminal; Ribosomal protein S5,... 0.01 OrthoFinder
OT_15G00990.1 No alias Ribosomal protein S5, C-terminal; Ribosomal protein S5,... 0.08 OrthoFinder
Sro1022_g232380.1 Contig2862.g22952 Protein S5 0.04 OrthoFinder
SymbC1.scaffold1.52 1.52 Ribosomal protein S5, N-terminal; Ribosomal protein S5,... 0.01 OrthoFinder
TPCG02620.1 No alias Ribosomal protein S5, C-terminal; Ribosomal protein S5,... 0.21 OrthoFinder
Transcript_contig_54625 54625 Ribosomal protein S5, C-terminal; Ribosomal protein S5,... 0.02 OrthoFinder
Transcript_contig_56867 56867 Ribosomal protein S5, N-terminal [Interproscan]. 0.01 OrthoFinder
Vocar.0029s0076.1 32887394 Hypothetical protein 0.04 OrthoFinder
XM_002506775.1 MICPUN_92603, 92603 Ribosomal protein S5, N-terminal; Ribosomal protein S5,... 0.1 OrthoFinder
XM_003057718.1 MicpuC2_32996, 32996 Ribosomal protein S5, C-terminal; Ribosomal protein S5,... 0.03 OrthoFinder
XM_003061002.1 MicpuC2_48160, 48160 Ribosomal protein S5, C-terminal; Ribosomal protein S5,... 0.04 OrthoFinder
lcl|LHPG02000012.1_cds_PRW44968.1_1935 PRW44968 30S ribosomal S5 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0003678 DNA helicase activity IEP Enrichment
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0003954 NADH dehydrogenase activity IEP Enrichment
MF GO:0003955 NAD(P)H dehydrogenase (quinone) activity IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
MF GO:0008137 NADH dehydrogenase (ubiquinone) activity IEP Enrichment
CC GO:0009512 cytochrome b6f complex IEP Enrichment
MF GO:0015002 obsolete heme-copper terminal oxidase activity IEP Enrichment
CC GO:0015934 large ribosomal subunit IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP Enrichment
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP Enrichment
MF GO:0016779 nucleotidyltransferase activity IEP Enrichment
BP GO:0017038 protein import IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
CC GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain IEP Enrichment
MF GO:0034062 5'-3' RNA polymerase activity IEP Enrichment
CC GO:0044391 ribosomal subunit IEP Enrichment
MF GO:0050136 NADH dehydrogenase (quinone) activity IEP Enrichment
CC GO:0070069 cytochrome complex IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
MF GO:0097747 RNA polymerase activity IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
InterPro domains Description Start Stop
IPR005324 Ribosomal_S5_C 98 168
IPR013810 Ribosomal_S5_N 22 84
No external refs found!