Sro51_chlor_g029480.1 (Rpl4)

Aliases : Rpl4

Description : Rpl4

Gene families : OG_01_0001152 (OrthoFinder) Phylogenetic Tree(s): OG0001152_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sro51_chlor_g029480.1
Cluster	HCCA: Cluster_109

Target	Alias	Description	ECC score	Gene Family Method
Cre11.g479500	30775927, PRPL4	Protein biosynthesis.organelle translation...	0.11	OrthoFinder
Cre12.g520400	30792302, MRPL4	No description available	0.03	OrthoFinder
Cz03g02040.t1	No alias	Ribosomal protein L4/L1e [Interproscan].	0.07	OrthoFinder
Dusal.0246s00007.1	33197700	Ribosomal protein L4/L1e [Interproscan].	0.02	OrthoFinder
EOD32718	No alias	Ribosomal protein L4/L1e [Interproscan].	0.02	OrthoFinder
OT_11G01720.1	No alias	Ribosomal protein L4/L1e [Interproscan].	0.01	OrthoFinder
OT_16G00330.1	No alias	Ribosomal protein L4/L1e [Interproscan].	0.09	OrthoFinder
Sro279_g106690.1	Contig3140.g24908	Protein L4	0.04	OrthoFinder
TPCG02350.1	No alias	Ribosomal protein L4/L1e [Interproscan].	0.18	OrthoFinder
Transcript_contig_54114	54114	Ribosomal protein L4/L1e [Interproscan].	0.02	OrthoFinder
Vocar.0037s0117.1	32897491	Ribosomal protein L4/L1e [Interproscan].	0.02	OrthoFinder
Vocar.0048s0048.1	32893676	Ribosomal protein L4/L1e [Interproscan].	0.03	OrthoFinder
XM_002503039.1	MICPUN_59033, 59033	Ribosomal protein L4/L1e [Interproscan].	0.09	OrthoFinder
XM_003061053.1	MicpuC2_48008, 48008	Ribosomal protein L4/L1e [Interproscan].	0.05	OrthoFinder
lcl\|BLLF01001390.1_cds_GFH19003.1_13480	HaLaN_15888, GFH19003	Ribosomal protein L4/L1e [Interproscan].	0.02	OrthoFinder
lcl\|LHPG02000011.1_cds_PRW45732.1_1468	PRW45732	50S ribosomal L4	0.05	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	Enrichment
MF	GO:0003677	DNA binding	IEP	Enrichment
MF	GO:0003678	DNA helicase activity	IEP	Enrichment
MF	GO:0003723	RNA binding	IEP	Enrichment
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEP	Enrichment
MF	GO:0003954	NADH dehydrogenase activity	IEP	Enrichment
MF	GO:0003955	NAD(P)H dehydrogenase (quinone) activity	IEP	Enrichment
MF	GO:0005488	binding	IEP	Enrichment
BP	GO:0006351	transcription, DNA-templated	IEP	Enrichment
MF	GO:0008137	NADH dehydrogenase (ubiquinone) activity	IEP	Enrichment
CC	GO:0009512	cytochrome b6f complex	IEP	Enrichment
MF	GO:0015002	obsolete heme-copper terminal oxidase activity	IEP	Enrichment
CC	GO:0015934	large ribosomal subunit	IEP	Enrichment
BP	GO:0016070	RNA metabolic process	IEP	Enrichment
MF	GO:0016651	oxidoreductase activity, acting on NAD(P)H	IEP	Enrichment
MF	GO:0016655	oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	IEP	Enrichment
MF	GO:0016779	nucleotidyltransferase activity	IEP	Enrichment
BP	GO:0017038	protein import	IEP	Enrichment
MF	GO:0019843	rRNA binding	IEP	Enrichment
BP	GO:0032774	RNA biosynthetic process	IEP	Enrichment
CC	GO:0033177	proton-transporting two-sector ATPase complex, proton-transporting domain	IEP	Enrichment
MF	GO:0034062	5'-3' RNA polymerase activity	IEP	Enrichment
CC	GO:0044391	ribosomal subunit	IEP	Enrichment
MF	GO:0050136	NADH dehydrogenase (quinone) activity	IEP	Enrichment
CC	GO:0070069	cytochrome complex	IEP	Enrichment
BP	GO:0090304	nucleic acid metabolic process	IEP	Enrichment
MF	GO:0097159	organic cyclic compound binding	IEP	Enrichment
BP	GO:0097659	nucleic acid-templated transcription	IEP	Enrichment
MF	GO:0097747	RNA polymerase activity	IEP	Enrichment
MF	GO:0140098	catalytic activity, acting on RNA	IEP	Enrichment
MF	GO:1901363	heterocyclic compound binding	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR002136	Ribosomal_L4/L1e	36	211

External Links

No external refs found!

Sro51_chlor_g029480.1 (Rpl4)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation