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  5. Sro51_chlor_g029470.1

Sro51_chlor_g029470.1 (Rpl3)


Aliases : Rpl3

Description : Rpl3


Gene families : OG_01_0000938 (OrthoFinder) Phylogenetic Tree(s): OG0000938_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro51_chlor_g029470.1
Cluster HCCA: Cluster_109

Target Alias Description ECC score Gene Family Method Actions
Cre01.g022250 30789331, MRPL3 Protein biosynthesis.organelle translation... 0.05 OrthoFinder
Cre48.g761197 30778371 Protein biosynthesis.organelle translation... 0.11 OrthoFinder
Cz04g11050.t1 No alias Hypothetical protein 0.06 OrthoFinder
Cz04g11060.t1 No alias Ribosomal protein L3 [Interproscan]. 0.06 OrthoFinder
Dusal.0108s00003.1 33189525 Ribosomal protein L3 [Interproscan]. 0.02 OrthoFinder
OT_02G04320.1 No alias Ribosomal protein L3 [Interproscan]. 0.11 OrthoFinder
OT_20G00300.1 No alias Ribosomal protein L3 [Interproscan]. 0.03 OrthoFinder
TPCG02330.1 No alias Ribosomal protein L3 [Interproscan]. 0.04 OrthoFinder
Vocar.0006s0138.1 32894042 Ribosomal protein L3 [Interproscan]. 0.04 OrthoFinder
XM_002504954.1 MICPUN_62670, 62670 Ribosomal protein L3, chloroplast precursor (RPL3) 0.09 OrthoFinder
XM_003060563.1 MicpuC2_44548, 44548 Ribosomal protein L3 [Interproscan]. 0.05 OrthoFinder
XM_003062879.1 MicpuC2_6446, 6446 Ribosomal protein L3 [Interproscan]. 0.02 OrthoFinder
lcl|BLLF01001775.1_cds_GFH21186.1_15663 HaLaN_18435, GFH21186 Ribosomal protein L3 [Interproscan]. 0.03 OrthoFinder
lcl|BLLF01002609.1_cds_GFH24701.1_19178 HaLaN_22548, GFH24701 Ribosomal protein L3 [Interproscan]. 0.01 OrthoFinder
lcl|LHPG02000007.1_cds_PRW57537.1_8896 PRW57537 50S ribosomal L3-chloroplastic 0.01 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494995.1_3525 KAA8494995 50S ribosomal protein L3 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0003678 DNA helicase activity IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0003954 NADH dehydrogenase activity IEP Enrichment
MF GO:0003955 NAD(P)H dehydrogenase (quinone) activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
MF GO:0008137 NADH dehydrogenase (ubiquinone) activity IEP Enrichment
CC GO:0009512 cytochrome b6f complex IEP Enrichment
MF GO:0015002 obsolete heme-copper terminal oxidase activity IEP Enrichment
CC GO:0015934 large ribosomal subunit IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP Enrichment
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP Enrichment
MF GO:0016779 nucleotidyltransferase activity IEP Enrichment
BP GO:0017038 protein import IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
CC GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain IEP Enrichment
MF GO:0034062 5'-3' RNA polymerase activity IEP Enrichment
CC GO:0044391 ribosomal subunit IEP Enrichment
MF GO:0050136 NADH dehydrogenase (quinone) activity IEP Enrichment
CC GO:0070069 cytochrome complex IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
MF GO:0097747 RNA polymerase activity IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR000597 Ribosomal_L3 78 172
No external refs found!