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  5. Sro516_g158450.1

Sro516_g158450.1 (Contig3306.g25909)


Aliases : Contig3306.g25909

Description : UPF0176 protein


Gene families : OG_01_0000348 (OrthoFinder) Phylogenetic Tree(s): OG0000348_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro516_g158450.1
Cluster HCCA: Cluster_139

Target Alias Description ECC score Gene Family Method Actions
Cre06.g304600 30780159 Rhodanese-like domain-containing protein 8,... 0.04 OrthoFinder
Dusal.0102s00023.1 33190538 Rhodanase, C-terminal; UPF0176, acylphosphatase-like... 0.02 OrthoFinder
TP01G10750.1 No alias UPF0176, acylphosphatase-like domain [Interproscan]. 0.02 OrthoFinder
TP06G05970.1 No alias UPF0176, acylphosphatase-like domain; Rhodanese-like... 0.04 OrthoFinder
TP10G03150.1 No alias UPF0176, acylphosphatase-like domain; RNA recognition... 0.02 OrthoFinder
Transcript_contig_54247 54247 Rhodanase, C-terminal; Rhodanese-like domain [Interproscan]. 0.01 OrthoFinder
Transcript_contig_55821 55821 UPF0176, acylphosphatase-like domain [Interproscan]. 0.01 OrthoFinder
Vocar.0020s0147.1 32886720 Rhodanase, C-terminal; Rhodanese-like domain; UPF0176,... 0.02 OrthoFinder
XM_002506663.1 MICPUN_89019, 89019 Rhodanese-like domain [Interproscan]. 0.03 OrthoFinder
XM_003058427.1 MicpuC2_58038, 58038 Rhodanese-like domain; Rhodanase, C-terminal; UPF0176,... 0.02 OrthoFinder
XM_003062322.1 MicpuC2_52148, 52148 Rhodanese-like domain; Rhodanase, C-terminal; UPF0176,... 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Enrichment
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003743 translation initiation factor activity IEP Enrichment
MF GO:0004499 N,N-dimethylaniline monooxygenase activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
BP GO:0006360 transcription by RNA polymerase I IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006413 translational initiation IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
MF GO:0008135 translation factor activity, RNA binding IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
MF GO:0009982 pseudouridine synthase activity IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016491 oxidoreductase activity IEP Enrichment
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Enrichment
MF GO:0016706 2-oxoglutarate-dependent dioxygenase activity IEP Enrichment
MF GO:0016709 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen IEP Enrichment
MF GO:0016853 isomerase activity IEP Enrichment
MF GO:0016866 intramolecular transferase activity IEP Enrichment
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Enrichment
MF GO:0030246 carbohydrate binding IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
MF GO:0031406 carboxylic acid binding IEP Enrichment
MF GO:0031418 L-ascorbic acid binding IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
MF GO:0043177 organic acid binding IEP Enrichment
BP GO:0043412 macromolecule modification IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
MF GO:0045182 translation regulator activity IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
MF GO:0048029 monosaccharide binding IEP Enrichment
MF GO:0050660 flavin adenine dinucleotide binding IEP Enrichment
MF GO:0050661 NADP binding IEP Enrichment
MF GO:0051213 dioxygenase activity IEP Enrichment
BP GO:0055114 obsolete oxidation-reduction process IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
MF GO:0090079 translation regulator activity, nucleic acid binding IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR040503 TRHO_N 242 347
IPR022111 Rhodanese_C 487 565
No external refs found!