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  5. Sro4_g003520.1

Sro4_g003520.1 (Contig3815.g29270)


Aliases : Contig3815.g29270

Description : Protein SGT1 homolog


Gene families : OG_01_0003824 (OrthoFinder) Phylogenetic Tree(s): OG0003824_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro4_g003520.1
Cluster HCCA: Cluster_5

Target Alias Description ECC score Gene Family Method Actions
Cre12.g513600 30793070 External stimuli response.biotic stress.pathogen... 0.03 OrthoFinder
Cz12g28170.t1 No alias SGS domain; CS domain; Tetratricopeptide repeat 1 [Interproscan]. 0.02 OrthoFinder
Dusal.0545s00007.1 33199355 SGS domain [Interproscan]. 0.01 OrthoFinder
PTI_05G03160.1 No alias CS domain; SGS domain [Interproscan]. 0.02 OrthoFinder
TP08G01530.1 No alias SGS domain; CS domain [Interproscan]. 0.06 OrthoFinder
XM_003055146.1 MicpuC2_12669, 12669 CS domain; SGS domain; Tetratricopeptide repeat [Interproscan]. 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP Enrichment
BP GO:0000375 RNA splicing, via transesterification reactions IEP Enrichment
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Enrichment
BP GO:0000398 mRNA splicing, via spliceosome IEP Enrichment
MF GO:0003690 double-stranded DNA binding IEP Enrichment
MF GO:0005200 structural constituent of cytoskeleton IEP Enrichment
BP GO:0006397 mRNA processing IEP Enrichment
BP GO:0006405 RNA export from nucleus IEP Enrichment
BP GO:0006406 mRNA export from nucleus IEP Enrichment
BP GO:0006913 nucleocytoplasmic transport IEP Enrichment
BP GO:0008380 RNA splicing IEP Enrichment
CC GO:0008541 proteasome regulatory particle, lid subcomplex IEP Enrichment
BP GO:0015931 nucleobase-containing compound transport IEP Enrichment
BP GO:0016043 cellular component organization IEP Enrichment
BP GO:0016071 mRNA metabolic process IEP Enrichment
BP GO:0016579 protein deubiquitination IEP Enrichment
BP GO:0022607 cellular component assembly IEP Enrichment
MF GO:0034450 ubiquitin-ubiquitin ligase activity IEP Enrichment
BP GO:0034622 cellular protein-containing complex assembly IEP Enrichment
BP GO:0043248 proteasome assembly IEP Enrichment
BP GO:0043933 protein-containing complex subunit organization IEP Enrichment
BP GO:0050657 nucleic acid transport IEP Enrichment
BP GO:0050658 RNA transport IEP Enrichment
BP GO:0051028 mRNA transport IEP Enrichment
BP GO:0051168 nuclear export IEP Enrichment
BP GO:0051169 nuclear transport IEP Enrichment
BP GO:0051236 establishment of RNA localization IEP Enrichment
MF GO:0061630 ubiquitin protein ligase activity IEP Enrichment
MF GO:0061659 ubiquitin-like protein ligase activity IEP Enrichment
BP GO:0065003 protein-containing complex assembly IEP Enrichment
BP GO:0070646 protein modification by small protein removal IEP Enrichment
BP GO:0070647 protein modification by small protein conjugation or removal IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
CC GO:1990234 transferase complex IEP Enrichment
InterPro domains Description Start Stop
IPR007699 SGS_dom 355 437
IPR007052 CS_dom 217 293
No external refs found!