1. Home
  2. Species
  3. Seminavis robusta
  4. Sequence
  5. Sro47_g027700.1

Sro47_g027700.1 (Contig1172.g11163)


Aliases : Contig1172.g11163

Description : Box-binding protein-like protein 2


Gene families : OG_01_0002801 (OrthoFinder) Phylogenetic Tree(s): OG0002801_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro47_g027700.1
Cluster HCCA: Cluster_309

Target Alias Description ECC score Gene Family Method Actions
Cre12.g505700 30791964 RNA biosynthesis.RNA polymerase III-dependent... 0.02 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495316.1_1314 KAA8495316 TATA-box-binding protein 0.02 OrthoFinder
lcl|VRMN01000014.1_cds_KAA8491410.1_2411 KAA8491410 TATA-box-binding protein 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
BP GO:0006352 DNA-templated transcription, initiation IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003684 damaged DNA binding IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005681 spliceosomal complex IEP Enrichment
BP GO:0006914 autophagy IEP Enrichment
BP GO:0007034 vacuolar transport IEP Enrichment
BP GO:0008380 RNA splicing IEP Enrichment
BP GO:0010035 response to inorganic substance IEP Enrichment
BP GO:0010038 response to metal ion IEP Enrichment
MF GO:0016755 aminoacyltransferase activity IEP Enrichment
MF GO:0016756 glutathione gamma-glutamylcysteinyltransferase activity IEP Enrichment
MF GO:0030145 manganese ion binding IEP Enrichment
BP GO:0042221 response to chemical IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0044550 secondary metabolite biosynthetic process IEP Enrichment
BP GO:0046937 phytochelatin metabolic process IEP Enrichment
BP GO:0046938 phytochelatin biosynthetic process IEP Enrichment
BP GO:0048193 Golgi vesicle transport IEP Enrichment
BP GO:0050896 response to stimulus IEP Enrichment
BP GO:0061919 process utilizing autophagic mechanism IEP Enrichment
MF GO:0070403 NAD+ binding IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
InterPro domains Description Start Stop
IPR000814 TBP 142 224
IPR000814 TBP 52 130
No external refs found!