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  5. Sro479_g151180.1

Sro479_g151180.1 (Contig1858.g16253)


Aliases : Contig1858.g16253

Description : Ribonucleoprotein Sm D3


Gene families : OG_01_0000904 (OrthoFinder) Phylogenetic Tree(s): OG0000904_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro479_g151180.1
Cluster HCCA: Cluster_269

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000480.60 tig00000480_g1327.t1 RNA processing.RNA splicing.U6-associated LSm accessory... 0.02 OrthoFinder
Cpa|evm.model.tig00020912.17 tig00020912_g15787.t1 RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.02 OrthoFinder
Cre06.g251300 30779242 RNA processing.RNA splicing.U6-associated LSm accessory... 0.04 OrthoFinder
Cre10.g455300 30789915 RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.01 OrthoFinder
Dusal.0086s00033.1 33192754 LSM domain, eukaryotic/archaea-type [Interproscan]. 0.01 OrthoFinder
Dusal.0437s00010.1 33198266 LSM domain, eukaryotic/archaea-type [Interproscan]. 0.02 OrthoFinder
EOD19002 No alias LSM domain, eukaryotic/archaea-type [Interproscan]. 0.02 OrthoFinder
OT_03G00490.1 No alias LSM domain, eukaryotic/archaea-type [Interproscan]. 0.01 OrthoFinder
TP13G00410.1 No alias LSM domain, eukaryotic/archaea-type [Interproscan]. 0.03 OrthoFinder
UNPLg00366.t1 No alias LSM domain, eukaryotic/archaea-type [Interproscan]. 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Enrichment
MF GO:0004298 threonine-type endopeptidase activity IEP Enrichment
CC GO:0005839 proteasome core complex IEP Enrichment
BP GO:0006508 proteolysis IEP Enrichment
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Enrichment
BP GO:0006766 vitamin metabolic process IEP Enrichment
BP GO:0006767 water-soluble vitamin metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
BP GO:0009057 macromolecule catabolic process IEP Enrichment
BP GO:0009235 cobalamin metabolic process IEP Enrichment
BP GO:0018193 peptidyl-amino acid modification IEP Enrichment
BP GO:0018208 peptidyl-proline modification IEP Enrichment
BP GO:0019538 protein metabolic process IEP Enrichment
BP GO:0019941 modification-dependent protein catabolic process IEP Enrichment
BP GO:0033013 tetrapyrrole metabolic process IEP Enrichment
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Enrichment
BP GO:0044248 cellular catabolic process IEP Enrichment
BP GO:0044265 cellular macromolecule catabolic process IEP Enrichment
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Enrichment
MF GO:0070003 threonine-type peptidase activity IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
BP GO:1901564 organonitrogen compound metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR001163 LSM_dom_euk/arc 13 75
No external refs found!