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Aliases : Contig4657.g34668
Description : ECF subfamily RNA polymerase sigma-24 subunit
Gene families : OG_01_0000220 (OrthoFinder) Phylogenetic Tree(s): OG0000220_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Sro459_g147280.1 | |
| Cluster | HCCA: Cluster_304 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Sro144_g067110.1 | Contig3873.g29810 | ECF subfamily RNA polymerase sigma-24 subunit | 0.02 | OrthoFinder | |
| Sro1513_g278830.1 | Contig507.g6747 | ECF subfamily RNA polymerase sigma-24 subunit | 0.03 | OrthoFinder | |
| Sro1913_g305010.1 | Contig2551.g20751 | Domain protein | 0.04 | OrthoFinder | |
| Sro212_g088130.1 | Contig3756.g28796 | Signal recognition particle-docking protein FtsY | 0.05 | OrthoFinder | |
| Sro2221_g319641.1 | No alias | Hypothetical protein | 0.03 | OrthoFinder | |
| Sro2289_g322140.1 | Contig3942.g30223 | Hypothetical protein | 0.04 | OrthoFinder | |
| Sro379_g130430.1 | Contig3398.g26560 | Cathepsin | 0.03 | OrthoFinder | |
| Sro431_g141380.1 | Contig2042.g17541 | Laminin G sub domain 2 | 0.03 | OrthoFinder | |
| Sro46_g027260.1 | Contig1636.g14716 | Hypothetical protein | 0.03 | OrthoFinder | |
| Sro624_g177270.1 | Contig2249.g18632 | Laminin G sub domain 2 | 0.03 | OrthoFinder | |
| Sro830_g208180.1 | Contig4325.g32633 | Inherit from NOG: Serine repeat antigen | 0.03 | OrthoFinder | |
| Sro8_g006550.1 | Contig89.g968 | Laminin G sub domain 2 | 0.03 | OrthoFinder | |
| Sro8_g006730.1 | Contig89.g986 | ECF subfamily RNA polymerase sigma-24 subunit | 0.02 | OrthoFinder | |
| Sro8_g006820.1 | Contig89.g995 | ECF subfamily RNA polymerase sigma-24 subunit | 0.04 | OrthoFinder |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0000062 | fatty-acyl-CoA binding | IEP | Enrichment |
| BP | GO:0000160 | phosphorelay signal transduction system | IEP | Enrichment |
| MF | GO:0003674 | molecular_function | IEP | Enrichment |
| MF | GO:0004112 | cyclic-nucleotide phosphodiesterase activity | IEP | Enrichment |
| MF | GO:0004114 | 3',5'-cyclic-nucleotide phosphodiesterase activity | IEP | Enrichment |
| MF | GO:0004312 | fatty acid synthase activity | IEP | Enrichment |
| MF | GO:0004315 | 3-oxoacyl-[acyl-carrier-protein] synthase activity | IEP | Enrichment |
| MF | GO:0005096 | GTPase activator activity | IEP | Enrichment |
| MF | GO:0005216 | ion channel activity | IEP | Enrichment |
| MF | GO:0005230 | extracellular ligand-gated ion channel activity | IEP | Enrichment |
| BP | GO:0006631 | fatty acid metabolic process | IEP | Enrichment |
| BP | GO:0006633 | fatty acid biosynthetic process | IEP | Enrichment |
| BP | GO:0007165 | signal transduction | IEP | Enrichment |
| MF | GO:0008047 | enzyme activator activity | IEP | Enrichment |
| BP | GO:0008150 | biological_process | IEP | Enrichment |
| MF | GO:0009055 | electron transfer activity | IEP | Enrichment |
| BP | GO:0009987 | cellular process | IEP | Enrichment |
| MF | GO:0015035 | protein-disulfide reductase activity | IEP | Enrichment |
| MF | GO:0015036 | disulfide oxidoreductase activity | IEP | Enrichment |
| MF | GO:0015267 | channel activity | IEP | Enrichment |
| MF | GO:0015276 | ligand-gated ion channel activity | IEP | Enrichment |
| MF | GO:0016667 | oxidoreductase activity, acting on a sulfur group of donors | IEP | Enrichment |
| MF | GO:0020037 | heme binding | IEP | Enrichment |
| MF | GO:0022803 | passive transmembrane transporter activity | IEP | Enrichment |
| MF | GO:0022834 | ligand-gated channel activity | IEP | Enrichment |
| MF | GO:0022836 | gated channel activity | IEP | Enrichment |
| MF | GO:0030234 | enzyme regulator activity | IEP | Enrichment |
| MF | GO:0030695 | GTPase regulator activity | IEP | Enrichment |
| MF | GO:0033218 | amide binding | IEP | Enrichment |
| BP | GO:0035556 | intracellular signal transduction | IEP | Enrichment |
| MF | GO:0046906 | tetrapyrrole binding | IEP | Enrichment |
| BP | GO:0050789 | regulation of biological process | IEP | Enrichment |
| BP | GO:0050794 | regulation of cellular process | IEP | Enrichment |
| MF | GO:0051082 | unfolded protein binding | IEP | Enrichment |
| MF | GO:0060589 | nucleoside-triphosphatase regulator activity | IEP | Enrichment |
| BP | GO:0065007 | biological regulation | IEP | Enrichment |
| BP | GO:0072330 | monocarboxylic acid biosynthetic process | IEP | Enrichment |
| MF | GO:0098772 | molecular function regulator | IEP | Enrichment |
| MF | GO:0120227 | acyl-CoA binding | IEP | Enrichment |
| MF | GO:1901567 | fatty acid derivative binding | IEP | Enrichment |
| MF | GO:1901681 | sulfur compound binding | IEP | Enrichment |
No InterPro domains available for this sequence
| No external refs found! |