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  5. Sro436_g142590.1

Sro436_g142590.1 (Contig228.g2747)


Aliases : Contig228.g2747

Description : Lipopolysaccharide-responsive and beige-like anchor protein


Gene families : OG_01_0000641 (OrthoFinder) Phylogenetic Tree(s): OG0000641_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro436_g142590.1
Cluster HCCA: Cluster_248

Target Alias Description ECC score Gene Family Method Actions
PTI_02G06570.1 No alias BEACH domain; PH-BEACH domain [Interproscan]. 0.01 OrthoFinder
PTI_04G02200.1 No alias BEACH domain; PH-BEACH domain [Interproscan]. 0.03 OrthoFinder
PTI_11G00330.1 No alias BEACH domain; PH-BEACH domain; WD40 repeat [Interproscan]. 0.02 OrthoFinder
PTI_25G00490.1 No alias BEACH domain; Domain of unknown function DUF4704;... 0.02 OrthoFinder
XM_002500128.1 MICPUN_55931, 55931 BEACH/WD40 domain fusion protein 0.01 OrthoFinder
XM_002503222.1 MICPUN_82791, 82791 BEACH domain; WD40 repeat; PH-BEACH domain [Interproscan]. 0.03 OrthoFinder
lcl|LHPG02000015.1_cds_PRW34047.1_2969 PRW34047 BEACH domain-containing lvsC isoform X1 isoform B 0.03 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0004386 helicase activity IEP Enrichment
MF GO:0004652 polynucleotide adenylyltransferase activity IEP Enrichment
MF GO:0004842 ubiquitin-protein transferase activity IEP Enrichment
MF GO:0005543 phospholipid binding IEP Enrichment
BP GO:0006325 chromatin organization IEP Enrichment
BP GO:0006354 DNA-templated transcription, elongation IEP Enrichment
BP GO:0006368 transcription elongation from RNA polymerase II promoter IEP Enrichment
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Enrichment
BP GO:0006887 exocytosis IEP Enrichment
CC GO:0008023 transcription elongation factor complex IEP Enrichment
MF GO:0008289 lipid binding IEP Enrichment
BP GO:0016569 covalent chromatin modification IEP Enrichment
BP GO:0016570 histone modification IEP Enrichment
CC GO:0016593 Cdc73/Paf1 complex IEP Enrichment
MF GO:0019787 ubiquitin-like protein transferase activity IEP Enrichment
MF GO:0019899 enzyme binding IEP Enrichment
BP GO:0019941 modification-dependent protein catabolic process IEP Enrichment
MF GO:0031625 ubiquitin protein ligase binding IEP Enrichment
BP GO:0032940 secretion by cell IEP Enrichment
MF GO:0035091 phosphatidylinositol binding IEP Enrichment
BP GO:0043631 RNA polyadenylation IEP Enrichment
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Enrichment
BP GO:0044265 cellular macromolecule catabolic process IEP Enrichment
MF GO:0044389 ubiquitin-like protein ligase binding IEP Enrichment
BP GO:0046903 secretion IEP Enrichment
MF GO:0070566 adenylyltransferase activity IEP Enrichment
BP GO:0140352 export from cell IEP Enrichment
InterPro domains Description Start Stop
IPR000409 BEACH_dom 428 702
IPR023362 PH-BEACH_dom 324 408
No external refs found!