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  5. Sro42_g025570.1

Sro42_g025570.1 (Contig312.g4134)


Aliases : Contig312.g4134

Description : Dependent helicase HRQ1


Gene families : OG_01_0001917 (OrthoFinder) Phylogenetic Tree(s): OG0001917_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro42_g025570.1
Cluster HCCA: Cluster_96

Target Alias Description ECC score Gene Family Method Actions
TP03G06590.1 No alias Helicase, C-terminal; DEAD/DEAH-box helicase, putative;... 0.02 OrthoFinder
Transcript_contig_89138 89138 Hypothetical protein 0.01 OrthoFinder
lcl|LHPG02000002.1_cds_PRW60493.1_4368 PRW60493 ATP-dependent helicase hrq1 isoform X1 0.04 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP Enrichment
MF GO:0003684 damaged DNA binding IEP Enrichment
MF GO:0003968 RNA-directed 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0004386 helicase activity IEP Enrichment
MF GO:0004721 phosphoprotein phosphatase activity IEP Enrichment
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Enrichment
MF GO:0008094 ATPase, acting on DNA IEP Enrichment
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP Enrichment
BP GO:0009057 macromolecule catabolic process IEP Enrichment
MF GO:0009982 pseudouridine synthase activity IEP Enrichment
BP GO:0016311 dephosphorylation IEP Enrichment
BP GO:0019941 modification-dependent protein catabolic process IEP Enrichment
MF GO:0034062 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0034450 ubiquitin-ubiquitin ligase activity IEP Enrichment
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Enrichment
BP GO:0044265 cellular macromolecule catabolic process IEP Enrichment
MF GO:0051287 NAD binding IEP Enrichment
MF GO:0061630 ubiquitin protein ligase activity IEP Enrichment
MF GO:0061659 ubiquitin-like protein ligase activity IEP Enrichment
MF GO:0070403 NAD+ binding IEP Enrichment
MF GO:0097747 RNA polymerase activity IEP Enrichment
CC GO:0140535 intracellular protein-containing complex IEP Enrichment
CC GO:1990234 transferase complex IEP Enrichment
InterPro domains Description Start Stop
IPR018973 DEAD/DEAH-box_helicase 1125 1209
IPR011545 DEAD/DEAH_box_helicase_dom 324 521
IPR001650 Helicase_C 638 742
No external refs found!