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  5. Sro428_g140910.1

Sro428_g140910.1 (Contig2589.g21019)


Aliases : Contig2589.g21019

Description : Sm-like protein LSm3


Gene families : OG_01_0004585 (OrthoFinder) Phylogenetic Tree(s): OG0004585_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro428_g140910.1
Cluster HCCA: Cluster_33

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020927.50 tig00020927_g15980.t1 RNA processing.RNA splicing.U6-associated LSm accessory... 0.02 OrthoFinder
Cre16.g662300 30777721 RNA processing.RNA splicing.U6-associated LSm accessory... 0.02 OrthoFinder
Dusal.0165s00023.1 33193351 LSM domain, eukaryotic/archaea-type [Interproscan]. 0.01 OrthoFinder
EOD14715 No alias LSM domain, eukaryotic/archaea-type [Interproscan]. 0.06 OrthoFinder
PTI_28G00710.1 No alias LSM domain, eukaryotic/archaea-type [Interproscan]. 0.04 OrthoFinder
TP17G01110.1 No alias LSM domain, eukaryotic/archaea-type [Interproscan]. 0.03 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Enrichment
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Enrichment
CC GO:0005875 microtubule associated complex IEP Enrichment
BP GO:0007017 microtubule-based process IEP Enrichment
MF GO:0016859 cis-trans isomerase activity IEP Enrichment
BP GO:0018193 peptidyl-amino acid modification IEP Enrichment
BP GO:0018208 peptidyl-proline modification IEP Enrichment
CC GO:0030286 dynein complex IEP Enrichment
CC GO:1902494 catalytic complex IEP Enrichment
InterPro domains Description Start Stop
IPR001163 LSM_dom_euk/arc 8 84
No external refs found!