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  5. Sro413_g138080.1

Sro413_g138080.1 (Contig3915.g30008)


Aliases : Contig3915.g30008

Description : AP-1 complex subunit beta-1


Gene families : OG_01_0000809 (OrthoFinder) Phylogenetic Tree(s): OG0000809_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro413_g138080.1
Cluster HCCA: Cluster_164

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020592.38 tig00020592_g11671.t1 Vesicle trafficking.clathrin coated vesicle (CCV)... 0.06 OrthoFinder
Cre05.g234665 30783487, AP4B4 Vesicle trafficking.endomembrane trafficking.vacuolar... 0.06 OrthoFinder
Cre11.g478156 30775875 Vesicle trafficking.clathrin coated vesicle (CCV)... 0.05 OrthoFinder
Cz02g23050.t1 No alias Clathrin/coatomer adaptor, adaptin-like, N-terminal;... 0.06 OrthoFinder
Cz14g09210.t1 No alias Clathrin/coatomer adaptor, adaptin-like, N-terminal;... 0.07 OrthoFinder
Dusal.0391s00014.1 33187360 Clathrin/coatomer adaptor, adaptin-like, N-terminal... 0.02 OrthoFinder
EOD14985 No alias Adaptor protein 2 beta subunit 1 [Ensembl]. 0.05 OrthoFinder
OT_02G02420.1 No alias Clathrin/coatomer adaptor, adaptin-like, N-terminal... 0.02 OrthoFinder
PTI_00G04320.1 No alias Beta-adaptin appendage, C-terminal subdomain;... 0.02 OrthoFinder
PTI_13G02480.1 No alias Beta-adaptin appendage, C-terminal subdomain;... 0.05 OrthoFinder
TP09G00880.1 No alias Clathrin/coatomer adaptor, adaptin-like, N-terminal;... 0.03 OrthoFinder
Transcript_contig_54664 54664 Beta-adaptin appendage, C-terminal subdomain;... 0.01 OrthoFinder
Transcript_contig_59442 59442 Clathrin/coatomer adaptor, adaptin-like, N-terminal... 0.01 OrthoFinder
Vocar.0027s0022.1 32887254 Beta-adaptin appendage, C-terminal subdomain;... 0.06 OrthoFinder
XM_002499698.1 MICPUN_55828, 55828 Beta-adaptin appendage, C-terminal subdomain;... 0.02 OrthoFinder
lcl|BLLF01000916.1_cds_GFH15891.1_10368 HaLaN_12212, GFH15891 AP complex subunit beta 0.02 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0006886 intracellular protein transport IEA Interproscan
BP GO:0016192 vesicle-mediated transport IEA Interproscan
CC GO:0030117 membrane coat IEA Interproscan
CC GO:0030131 clathrin adaptor complex IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000075 cell cycle checkpoint signaling IEP Enrichment
CC GO:0000145 exocyst IEP Enrichment
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003860 3-hydroxyisobutyryl-CoA hydrolase activity IEP Enrichment
MF GO:0004576 oligosaccharyl transferase activity IEP Enrichment
MF GO:0004594 pantothenate kinase activity IEP Enrichment
MF GO:0005198 structural molecule activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
BP GO:0006606 protein import into nucleus IEP Enrichment
BP GO:0006887 exocytosis IEP Enrichment
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP Enrichment
BP GO:0006891 intra-Golgi vesicle-mediated transport IEP Enrichment
BP GO:0006913 nucleocytoplasmic transport IEP Enrichment
BP GO:0007088 regulation of mitotic nuclear division IEP Enrichment
BP GO:0007093 mitotic cell cycle checkpoint signaling IEP Enrichment
BP GO:0007094 mitotic spindle assembly checkpoint signaling IEP Enrichment
BP GO:0007346 regulation of mitotic cell cycle IEP Enrichment
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Enrichment
BP GO:0010564 regulation of cell cycle process IEP Enrichment
BP GO:0010639 negative regulation of organelle organization IEP Enrichment
BP GO:0010948 negative regulation of cell cycle process IEP Enrichment
BP GO:0010965 regulation of mitotic sister chromatid separation IEP Enrichment
MF GO:0016289 CoA hydrolase activity IEP Enrichment
MF GO:0016790 thiolester hydrolase activity IEP Enrichment
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Enrichment
BP GO:0017038 protein import IEP Enrichment
CC GO:0017119 Golgi transport complex IEP Enrichment
BP GO:0022402 cell cycle process IEP Enrichment
BP GO:0030071 regulation of mitotic metaphase/anaphase transition IEP Enrichment
CC GO:0030118 clathrin coat IEP Enrichment
CC GO:0030120 vesicle coat IEP Enrichment
CC GO:0030125 clathrin vesicle coat IEP Enrichment
CC GO:0030126 COPI vesicle coat IEP Enrichment
CC GO:0030127 COPII vesicle coat IEP Enrichment
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEP Enrichment
CC GO:0030132 clathrin coat of coated pit IEP Enrichment
BP GO:0031577 spindle checkpoint signaling IEP Enrichment
BP GO:0032940 secretion by cell IEP Enrichment
BP GO:0033043 regulation of organelle organization IEP Enrichment
BP GO:0033044 regulation of chromosome organization IEP Enrichment
BP GO:0033045 regulation of sister chromatid segregation IEP Enrichment
BP GO:0033046 negative regulation of sister chromatid segregation IEP Enrichment
BP GO:0033047 regulation of mitotic sister chromatid segregation IEP Enrichment
BP GO:0033048 negative regulation of mitotic sister chromatid segregation IEP Enrichment
BP GO:0033365 protein localization to organelle IEP Enrichment
BP GO:0034504 protein localization to nucleus IEP Enrichment
BP GO:0034613 cellular protein localization IEP Enrichment
BP GO:0045786 negative regulation of cell cycle IEP Enrichment
BP GO:0045839 negative regulation of mitotic nuclear division IEP Enrichment
BP GO:0045841 negative regulation of mitotic metaphase/anaphase transition IEP Enrichment
BP GO:0045930 negative regulation of mitotic cell cycle IEP Enrichment
BP GO:0046903 secretion IEP Enrichment
BP GO:0048193 Golgi vesicle transport IEP Enrichment
BP GO:0048519 negative regulation of biological process IEP Enrichment
BP GO:0048523 negative regulation of cellular process IEP Enrichment
BP GO:0051128 regulation of cellular component organization IEP Enrichment
BP GO:0051129 negative regulation of cellular component organization IEP Enrichment
BP GO:0051169 nuclear transport IEP Enrichment
BP GO:0051170 import into nucleus IEP Enrichment
BP GO:0051726 regulation of cell cycle IEP Enrichment
BP GO:0051783 regulation of nuclear division IEP Enrichment
BP GO:0051784 negative regulation of nuclear division IEP Enrichment
BP GO:0051983 regulation of chromosome segregation IEP Enrichment
BP GO:0051985 negative regulation of chromosome segregation IEP Enrichment
MF GO:0061608 nuclear import signal receptor activity IEP Enrichment
BP GO:0070727 cellular macromolecule localization IEP Enrichment
BP GO:0071173 spindle assembly checkpoint signaling IEP Enrichment
BP GO:0071174 mitotic spindle checkpoint signaling IEP Enrichment
BP GO:0072594 establishment of protein localization to organelle IEP Enrichment
CC GO:0098797 plasma membrane protein complex IEP Enrichment
CC GO:0099023 vesicle tethering complex IEP Enrichment
MF GO:0140104 molecular carrier activity IEP Enrichment
MF GO:0140142 nucleocytoplasmic carrier activity IEP Enrichment
BP GO:0140352 export from cell IEP Enrichment
MF GO:0140597 protein carrier activity IEP Enrichment
BP GO:1901987 regulation of cell cycle phase transition IEP Enrichment
BP GO:1901988 negative regulation of cell cycle phase transition IEP Enrichment
BP GO:1901990 regulation of mitotic cell cycle phase transition IEP Enrichment
BP GO:1901991 negative regulation of mitotic cell cycle phase transition IEP Enrichment
BP GO:1902099 regulation of metaphase/anaphase transition of cell cycle IEP Enrichment
BP GO:1902100 negative regulation of metaphase/anaphase transition of cell cycle IEP Enrichment
BP GO:1903047 mitotic cell cycle process IEP Enrichment
BP GO:1905818 regulation of chromosome separation IEP Enrichment
BP GO:1905819 negative regulation of chromosome separation IEP Enrichment
BP GO:2000816 negative regulation of mitotic sister chromatid separation IEP Enrichment
BP GO:2001251 negative regulation of chromosome organization IEP Enrichment
InterPro domains Description Start Stop
IPR015151 B-adaptin_app_sub_C 698 791
IPR002553 Clathrin/coatomer_adapt-like_N 30 559
No external refs found!