Sro408_g136940.1 (Contig3193.g25229)

Aliases : Contig3193.g25229

Description : Licensing factor MCM4

Gene families : OG_01_0002239 (OrthoFinder) Phylogenetic Tree(s): OG0002239_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sro408_g136940.1
Cluster	HCCA: Cluster_213

Target	Alias	Description	ECC score	Gene Family Method
EOD16047	No alias	MCM, AAA-lid domain; MCM domain [Interproscan].	0.02	OrthoFinder
EOD37691	No alias	MCM OB domain; MCM, AAA-lid domain; MCM domain [Interproscan].	0.01	OrthoFinder
Transcript_contig_53744	53744	MCM domain; MCM N-terminal domain; MCM OB domain [Interproscan].	0.01	OrthoFinder
lcl\|BLLF01000050.1_cds_GFH06666.1_1143	HaLaN_01335, GFH06666	DNA helicase	0.01	OrthoFinder
lcl\|BLLF01002444.1_cds_GFH24102.1_18579	HaLaN_21829, GFH24102	DNA helicase	0.01	OrthoFinder
lcl\|LHPG02000004.1_cds_PRW59221.1_7052	PRW59221	DNA replication licensing factor MCM4	0.02	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006270	DNA replication initiation	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0005634	nucleus	IEP	Enrichment
BP	GO:0006364	rRNA processing	IEP	Enrichment
MF	GO:0008233	peptidase activity	IEP	Enrichment
MF	GO:0008289	lipid binding	IEP	Enrichment
BP	GO:0016072	rRNA metabolic process	IEP	Enrichment
MF	GO:0016787	hydrolase activity	IEP	Enrichment
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	Enrichment
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEP	Enrichment
CC	GO:0030684	preribosome	IEP	Enrichment
CC	GO:0030688	preribosome, small subunit precursor	IEP	Enrichment
CC	GO:1990904	ribonucleoprotein complex	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR001208	MCM_dom	594	768
IPR001208	MCM_dom	501	548
IPR033762	MCM_OB	317	444
IPR027925	MCM_N	170	310
IPR041562	MCM_lid	783	872

External Links

No external refs found!

Sro408_g136940.1 (Contig3193.g25229)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation