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  5. Sro402_g135430.1

Sro402_g135430.1 (Contig305.g4004)


Aliases : Contig305.g4004

Description : ECF subfamily RNA polymerase sigma-24 subunit


Gene families : OG_01_0000794 (OrthoFinder) Phylogenetic Tree(s): OG0000794_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro402_g135430.1
Cluster HCCA: Cluster_199

Target Alias Description ECC score Gene Family Method Actions
Sro1146_g246330.1 Contig2727.g21994 Protein of unknown function (DUF3494) 0.03 OrthoFinder
Sro324_g117460.1 Contig590.g7384 Hypothetical protein 0.02 OrthoFinder
Sro48_g028360.1 Contig1255.g11731 Laminin G sub domain 2 0.06 OrthoFinder
Sro564_g167320.1 Contig73.g770 Membrane 0.03 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004312 fatty acid synthase activity IEP Enrichment
MF GO:0004315 3-oxoacyl-[acyl-carrier-protein] synthase activity IEP Enrichment
BP GO:0006508 proteolysis IEP Enrichment
BP GO:0006631 fatty acid metabolic process IEP Enrichment
BP GO:0006633 fatty acid biosynthetic process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
BP GO:0016053 organic acid biosynthetic process IEP Enrichment
BP GO:0016485 protein processing IEP Enrichment
BP GO:0016540 protein autoprocessing IEP Enrichment
BP GO:0019538 protein metabolic process IEP Enrichment
MF GO:0019842 vitamin binding IEP Enrichment
MF GO:0030170 pyridoxal phosphate binding IEP Enrichment
BP GO:0032787 monocarboxylic acid metabolic process IEP Enrichment
BP GO:0044255 cellular lipid metabolic process IEP Enrichment
BP GO:0046394 carboxylic acid biosynthetic process IEP Enrichment
BP GO:0051604 protein maturation IEP Enrichment
MF GO:0070279 vitamin B6 binding IEP Enrichment
BP GO:0072330 monocarboxylic acid biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR006970 PT 777 811
No external refs found!