1. Home
  2. Species
  3. Seminavis robusta
  4. Sequence
  5. Sro399_g134840.1

Sro399_g134840.1 (Contig279.g3611)


Aliases : Contig279.g3611

Description : Ribonucleoside-diphosphate reductase large


Gene families : OG_01_0001485 (OrthoFinder) Phylogenetic Tree(s): OG0001485_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro399_g134840.1
Cluster HCCA: Cluster_156

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001042.1 tig00001042_g6579.t1 Ribonucleoside-diphosphate reductase large subunit... 0.02 OrthoFinder
Cre12.g492950 30792262, RIR1 Nucleotide metabolism.deoxynucleotide... 0.08 OrthoFinder
Cz10g19230.t1 No alias ATP-cone domain; Ribonucleotide reductase large subunit,... 0.03 OrthoFinder
Dusal.0285s00017.1 33192879 Ribonucleotide reductase large subunit, C-terminal;... 0.04 OrthoFinder
EOD13106 No alias Ribonucleotide reductase large subunit, C-terminal... 0.08 OrthoFinder
OT_01G00090.1 No alias Ribonucleotide reductase large subunit, C-terminal;... 0.07 OrthoFinder
PTI_01G04160.1 No alias Ribonucleotide reductase large subunit, C-terminal;... 0.1 OrthoFinder
TP04G01330.1 No alias Ribonucleotide reductase large subunit, N-terminal;... 0.03 OrthoFinder
Transcript_contig_53771 53771 Ribonucleotide reductase large subunit, C-terminal;... 0.04 OrthoFinder
Vocar.0031s0085.1 32890180 ATP-cone domain; Ribonucleotide reductase large subunit,... 0.06 OrthoFinder
XM_002507347.1 MICPUN_93299, 93299 Ribonucleoside-diphosphate reductase 0.02 OrthoFinder
lcl|BLLF01000014.1_cds_GFH05936.1_413 HaLaN_00482, GFH05936 Ribonucleoside-diphosphate reductase 0.05 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006260 DNA replication IEA Interproscan
BP GO:0055114 obsolete oxidation-reduction process IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000062 fatty-acyl-CoA binding IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0003887 DNA-directed DNA polymerase activity IEP Enrichment
MF GO:0003896 DNA primase activity IEP Enrichment
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0004146 dihydrofolate reductase activity IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005667 transcription regulator complex IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006259 DNA metabolic process IEP Enrichment
BP GO:0006269 DNA replication, synthesis of RNA primer IEP Enrichment
BP GO:0006270 DNA replication initiation IEP Enrichment
BP GO:0006275 regulation of DNA replication IEP Enrichment
BP GO:0006298 mismatch repair IEP Enrichment
BP GO:0006575 cellular modified amino acid metabolic process IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006760 folic acid-containing compound metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
MF GO:0008234 cysteine-type peptidase activity IEP Enrichment
BP GO:0009396 folic acid-containing compound biosynthetic process IEP Enrichment
BP GO:0010639 negative regulation of organelle organization IEP Enrichment
MF GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors IEP Enrichment
MF GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor IEP Enrichment
MF GO:0016779 nucleotidyltransferase activity IEP Enrichment
MF GO:0030983 mismatched DNA binding IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
BP GO:0032780 negative regulation of ATPase activity IEP Enrichment
BP GO:0033043 regulation of organelle organization IEP Enrichment
BP GO:0033044 regulation of chromosome organization IEP Enrichment
MF GO:0033218 amide binding IEP Enrichment
MF GO:0034061 DNA polymerase activity IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0042398 cellular modified amino acid biosynthetic process IEP Enrichment
CC GO:0042555 MCM complex IEP Enrichment
BP GO:0042558 pteridine-containing compound metabolic process IEP Enrichment
BP GO:0042559 pteridine-containing compound biosynthetic process IEP Enrichment
BP GO:0043086 negative regulation of catalytic activity IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0043462 regulation of ATPase activity IEP Enrichment
BP GO:0044092 negative regulation of molecular function IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0046653 tetrahydrofolate metabolic process IEP Enrichment
BP GO:0046654 tetrahydrofolate biosynthetic process IEP Enrichment
BP GO:0048519 negative regulation of biological process IEP Enrichment
BP GO:0048523 negative regulation of cellular process IEP Enrichment
BP GO:0050790 regulation of catalytic activity IEP Enrichment
BP GO:0051095 regulation of helicase activity IEP Enrichment
BP GO:0051097 negative regulation of helicase activity IEP Enrichment
BP GO:0051128 regulation of cellular component organization IEP Enrichment
BP GO:0051129 negative regulation of cellular component organization IEP Enrichment
BP GO:0065009 regulation of molecular function IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0120227 acyl-CoA binding IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
MF GO:1901567 fatty acid derivative binding IEP Enrichment
MF GO:1901681 sulfur compound binding IEP Enrichment
BP GO:1905462 regulation of DNA duplex unwinding IEP Enrichment
BP GO:1905463 negative regulation of DNA duplex unwinding IEP Enrichment
BP GO:1905774 regulation of DNA helicase activity IEP Enrichment
BP GO:1905775 negative regulation of DNA helicase activity IEP Enrichment
BP GO:2001251 negative regulation of chromosome organization IEP Enrichment
InterPro domains Description Start Stop
IPR013509 RNR_lsu_N 143 213
IPR005144 ATP-cone_dom 3 89
IPR000788 RNR_lg_C 217 745
No external refs found!