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  5. Sro399_g134810.1

Sro399_g134810.1 (Contig279.g3608)


Aliases : Contig279.g3608

Description : CbbX homolog, chloroplastic


Gene families : OG_01_0000139 (OrthoFinder) Phylogenetic Tree(s): OG0000139_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro399_g134810.1
Cluster HCCA: Cluster_261

Target Alias Description ECC score Gene Family Method Actions
EOD27386 No alias CbbX, AAA lid domain; ATPase, AAA-type, core [Interproscan]. 0.03 OrthoFinder
EOD39426 No alias CbbX, AAA lid domain; ATPase, AAA-type, core [Interproscan]. 0.03 OrthoFinder
PTI_01G04190.1 No alias CbbX, AAA lid domain; ATPase, AAA-type, core [Interproscan]. 0.02 OrthoFinder
TP04G01350.1 No alias ATPase, AAA-type, core; CbbX, AAA lid domain [Interproscan]. 0.04 OrthoFinder
Vocar.0018s0151.1 32898554 DNA2/NAM7 helicase, AAA domain; DNA2/NAM7 helicase-like,... 0.01 OrthoFinder
lcl|BLLF01001831.1_cds_GFH21450.1_15927 HaLaN_18757, GFH21450 DNA2/NAM7 helicase, AAA domain [Interproscan]. 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003743 translation initiation factor activity IEP Enrichment
MF GO:0003746 translation elongation factor activity IEP Enrichment
MF GO:0003747 translation release factor activity IEP Enrichment
MF GO:0004425 indole-3-glycerol-phosphate synthase activity IEP Enrichment
BP GO:0006188 IMP biosynthetic process IEP Enrichment
BP GO:0006189 'de novo' IMP biosynthetic process IEP Enrichment
BP GO:0006413 translational initiation IEP Enrichment
BP GO:0006414 translational elongation IEP Enrichment
BP GO:0006415 translational termination IEP Enrichment
BP GO:0006605 protein targeting IEP Enrichment
BP GO:0006612 protein targeting to membrane IEP Enrichment
BP GO:0006613 cotranslational protein targeting to membrane IEP Enrichment
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP Enrichment
BP GO:0006810 transport IEP Enrichment
BP GO:0006811 ion transport IEP Enrichment
BP GO:0006820 anion transport IEP Enrichment
MF GO:0008079 translation termination factor activity IEP Enrichment
MF GO:0008135 translation factor activity, RNA binding IEP Enrichment
BP GO:0008272 sulfate transport IEP Enrichment
BP GO:0009123 nucleoside monophosphate metabolic process IEP Enrichment
BP GO:0009124 nucleoside monophosphate biosynthetic process IEP Enrichment
BP GO:0009126 purine nucleoside monophosphate metabolic process IEP Enrichment
BP GO:0009127 purine nucleoside monophosphate biosynthetic process IEP Enrichment
BP GO:0009152 purine ribonucleotide biosynthetic process IEP Enrichment
BP GO:0009156 ribonucleoside monophosphate biosynthetic process IEP Enrichment
BP GO:0009161 ribonucleoside monophosphate metabolic process IEP Enrichment
BP GO:0009167 purine ribonucleoside monophosphate metabolic process IEP Enrichment
BP GO:0009168 purine ribonucleoside monophosphate biosynthetic process IEP Enrichment
BP GO:0009260 ribonucleotide biosynthetic process IEP Enrichment
CC GO:0009507 chloroplast IEP Enrichment
CC GO:0009536 plastid IEP Enrichment
MF GO:0015103 inorganic anion transmembrane transporter activity IEP Enrichment
MF GO:0015116 sulfate transmembrane transporter activity IEP Enrichment
MF GO:0016491 oxidoreductase activity IEP Enrichment
MF GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor IEP Enrichment
MF GO:0016831 carboxy-lyase activity IEP Enrichment
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP Enrichment
BP GO:0022411 cellular component disassembly IEP Enrichment
BP GO:0032984 protein-containing complex disassembly IEP Enrichment
BP GO:0033365 protein localization to organelle IEP Enrichment
BP GO:0034613 cellular protein localization IEP Enrichment
BP GO:0043624 cellular protein complex disassembly IEP Enrichment
BP GO:0045047 protein targeting to ER IEP Enrichment
MF GO:0045182 translation regulator activity IEP Enrichment
BP GO:0046040 IMP metabolic process IEP Enrichment
BP GO:0046390 ribose phosphate biosynthetic process IEP Enrichment
MF GO:0046422 violaxanthin de-epoxidase activity IEP Enrichment
BP GO:0051179 localization IEP Enrichment
BP GO:0051234 establishment of localization IEP Enrichment
BP GO:0051668 localization within membrane IEP Enrichment
BP GO:0055114 obsolete oxidation-reduction process IEP Enrichment
BP GO:0070727 cellular macromolecule localization IEP Enrichment
BP GO:0070972 protein localization to endoplasmic reticulum IEP Enrichment
BP GO:0072348 sulfur compound transport IEP Enrichment
BP GO:0072594 establishment of protein localization to organelle IEP Enrichment
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP Enrichment
BP GO:0072657 protein localization to membrane IEP Enrichment
MF GO:0090079 translation regulator activity, nucleic acid binding IEP Enrichment
BP GO:0090150 establishment of protein localization to membrane IEP Enrichment
MF GO:1901682 sulfur compound transmembrane transporter activity IEP Enrichment
InterPro domains Description Start Stop
IPR003959 ATPase_AAA_core 200 329
IPR041627 AAA_lid_6 356 423
No external refs found!