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  5. Sro397_g134440.1

Sro397_g134440.1 (Contig157.g1782)


Aliases : Contig157.g1782

Description : Nexin 1


Gene families : OG_01_0000496 (OrthoFinder) Phylogenetic Tree(s): OG0000496_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro397_g134440.1
Cluster HCCA: Cluster_294

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001030.20 tig00001030_g6459.t1 Sorting nexin 1 OS=Arabidopsis thaliana 0.01 OrthoFinder
Cre02.g095102 30786038, VPS5C Vesicle trafficking.endomembrane trafficking.protein... 0.02 OrthoFinder
Cre10.g462300 30789872 Vesicle trafficking.endomembrane trafficking.protein... 0.03 OrthoFinder
OT_15G02090.1 No alias Sorting nexin Vps5-like, C-terminal; Phox homologous... 0.02 OrthoFinder
TP06G00510.1 No alias Phox homologous domain; Sorting nexin Vps5-like,... 0.03 OrthoFinder
Transcript_contig_54050 54050 Phox homologous domain [Interproscan]. 0.01 OrthoFinder
Transcript_contig_59078 59078 Phox homologous domain [Interproscan]. 0.01 OrthoFinder
Vocar.0029s0047.1 32887401 Phox homologous domain [Interproscan]. 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0035091 phosphatidylinositol binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003684 damaged DNA binding IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
CC GO:0005667 transcription regulator complex IEP Enrichment
CC GO:0005669 transcription factor TFIID complex IEP Enrichment
BP GO:0006352 DNA-templated transcription, initiation IEP Enrichment
BP GO:0006810 transport IEP Enrichment
BP GO:0006887 exocytosis IEP Enrichment
BP GO:0006914 autophagy IEP Enrichment
BP GO:0007034 vacuolar transport IEP Enrichment
BP GO:0032940 secretion by cell IEP Enrichment
BP GO:0046903 secretion IEP Enrichment
BP GO:0046907 intracellular transport IEP Enrichment
BP GO:0051179 localization IEP Enrichment
BP GO:0051234 establishment of localization IEP Enrichment
BP GO:0051641 cellular localization IEP Enrichment
BP GO:0051649 establishment of localization in cell IEP Enrichment
BP GO:0061919 process utilizing autophagic mechanism IEP Enrichment
CC GO:0090575 RNA polymerase II transcription regulator complex IEP Enrichment
BP GO:0140352 export from cell IEP Enrichment
InterPro domains Description Start Stop
IPR001683 PX_dom 24 143
IPR028245 PIL1/LSP1 170 377
IPR015404 Vps5_C 204 415
No external refs found!