1. Home
  2. Species
  3. Seminavis robusta
  4. Sequence
  5. Sro388_g132350.1

Sro388_g132350.1 (Contig4393.g33009)


Aliases : Contig4393.g33009

Description : Zinc finger, MYND-type [Interproscan].


Gene families : OG_01_0003899 (OrthoFinder) Phylogenetic Tree(s): OG0003899_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro388_g132350.1
Cluster HCCA: Cluster_92

Target Alias Description ECC score Gene Family Method Actions
Sro2174_g317680.1 Contig2241.g18603 Zinc finger, MYND-type [Interproscan]. 0.04 OrthoFinder
Sro294_g110150.1 Contig215.g2563 Hypothetical protein 0.02 OrthoFinder
Sro411_g137550.1 Contig243.g2961 Zinc finger, MYND-type [Interproscan]. 0.01 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP Enrichment
CC GO:0000152 nuclear ubiquitin ligase complex IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0004418 hydroxymethylbilane synthase activity IEP Enrichment
MF GO:0004521 endoribonuclease activity IEP Enrichment
MF GO:0004525 ribonuclease III activity IEP Enrichment
MF GO:0004540 ribonuclease activity IEP Enrichment
MF GO:0004842 ubiquitin-protein transferase activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005680 anaphase-promoting complex IEP Enrichment
BP GO:0006259 DNA metabolic process IEP Enrichment
BP GO:0006260 DNA replication IEP Enrichment
BP GO:0006270 DNA replication initiation IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0007346 regulation of mitotic cell cycle IEP Enrichment
BP GO:0009058 biosynthetic process IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
BP GO:0010498 proteasomal protein catabolic process IEP Enrichment
BP GO:0010564 regulation of cell cycle process IEP Enrichment
BP GO:0010965 regulation of mitotic sister chromatid separation IEP Enrichment
BP GO:0016567 protein ubiquitination IEP Enrichment
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP Enrichment
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Enrichment
MF GO:0019787 ubiquitin-like protein transferase activity IEP Enrichment
BP GO:0030071 regulation of mitotic metaphase/anaphase transition IEP Enrichment
BP GO:0030163 protein catabolic process IEP Enrichment
CC GO:0030915 Smc5-Smc6 complex IEP Enrichment
BP GO:0031145 anaphase-promoting complex-dependent catabolic process IEP Enrichment
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP Enrichment
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP Enrichment
BP GO:0032446 protein modification by small protein conjugation IEP Enrichment
BP GO:0033043 regulation of organelle organization IEP Enrichment
BP GO:0033044 regulation of chromosome organization IEP Enrichment
BP GO:0033045 regulation of sister chromatid segregation IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
CC GO:0042575 DNA polymerase complex IEP Enrichment
BP GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
CC GO:0043625 delta DNA polymerase complex IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044249 cellular biosynthetic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0051128 regulation of cellular component organization IEP Enrichment
MF GO:0051536 iron-sulfur cluster binding IEP Enrichment
MF GO:0051540 metal cluster binding IEP Enrichment
BP GO:0051726 regulation of cell cycle IEP Enrichment
BP GO:0051983 regulation of chromosome segregation IEP Enrichment
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Enrichment
BP GO:0070647 protein modification by small protein conjugation or removal IEP Enrichment
CC GO:0106068 SUMO ligase complex IEP Enrichment
CC GO:0140513 nuclear protein-containing complex IEP Enrichment
CC GO:0140535 intracellular protein-containing complex IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
BP GO:1901565 organonitrogen compound catabolic process IEP Enrichment
BP GO:1901576 organic substance biosynthetic process IEP Enrichment
BP GO:1901987 regulation of cell cycle phase transition IEP Enrichment
BP GO:1901990 regulation of mitotic cell cycle phase transition IEP Enrichment
BP GO:1902099 regulation of metaphase/anaphase transition of cell cycle IEP Enrichment
CC GO:1902494 catalytic complex IEP Enrichment
BP GO:1905818 regulation of chromosome separation IEP Enrichment
CC GO:1990234 transferase complex IEP Enrichment
InterPro domains Description Start Stop
IPR002893 Znf_MYND 184 222
No external refs found!