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  5. Sro387_g132160.1

Sro387_g132160.1 (Contig424.g5701)


Aliases : Contig424.g5701

Description : Spermatogenesis-associated protein 5-like protein 1


Gene families : OG_01_0000083 (OrthoFinder) Phylogenetic Tree(s): OG0000083_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro387_g132160.1
Cluster HCCA: Cluster_206

Target Alias Description ECC score Gene Family Method Actions
Cre17.g700300 30781628, CGL22 Cell division control protein 48 homolog B... 0.03 OrthoFinder
OT_01G00660.1 No alias ATPase, AAA-type, core; AAA ATPase, AAA+ lid domain... 0.02 OrthoFinder
PTI_27G01230.1 No alias ATPase, AAA-type, core; AAA ATPase, AAA+ lid domain... 0.02 OrthoFinder
TP05G03870.1 No alias ATPase, AAA-type, core; CDC48, domain 2; AAA ATPase,... 0.01 OrthoFinder
Vocar.0006s0118.1 32893929 NVL2, nucleolin binding domain; ATPase, AAA-type, core;... 0.01 OrthoFinder
lcl|LHPG02000025.1_cds_PRW20261.1_5630 PRW20261 Spermatogenesis-associated 0.03 OrthoFinder
lcl|VRMN01000017.1_cds_KAA8490912.1_6115 KAA8490912 Peroxisome biogenesis factor 1 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
MF GO:0009982 pseudouridine synthase activity IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
MF GO:0016853 isomerase activity IEP Enrichment
MF GO:0016866 intramolecular transferase activity IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR003959 ATPase_AAA_core 602 740
IPR003959 ATPase_AAA_core 324 462
No external refs found!