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  5. Sro381_g130930.1

Sro381_g130930.1 (Contig161.g1826)


Aliases : Contig161.g1826

Description : Polyubiquitin (Fragment)


Gene families : OG_01_0000054 (OrthoFinder) Phylogenetic Tree(s): OG0000054_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro381_g130930.1
Cluster HCCA: Cluster_292

Target Alias Description ECC score Gene Family Method Actions
lcl|BLLF01002296.1_cds_GFH23539.1_18016 HaLaN_21164, GFH23539 Ubiquitin-60S ribosomal L40 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP Enrichment
CC GO:0000152 nuclear ubiquitin ligase complex IEP Enrichment
CC GO:0005680 anaphase-promoting complex IEP Enrichment
BP GO:0006310 DNA recombination IEP Enrichment
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP Enrichment
MF GO:0008483 transaminase activity IEP Enrichment
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP Enrichment
MF GO:0016854 racemase and epimerase activity IEP Enrichment
MF GO:0016857 racemase and epimerase activity, acting on carbohydrates and derivatives IEP Enrichment
MF GO:0019825 oxygen binding IEP Enrichment
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP Enrichment
CC GO:1990234 transferase complex IEP Enrichment
InterPro domains Description Start Stop
IPR000626 Ubiquitin-like_dom 3 74
IPR002906 Ribosomal_S27a 103 145
No external refs found!