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Aliases : Contig3640.g28118
Description : Fucoxanthin-chlorophyll a-c binding protein
Gene families : OG_01_0000059 (OrthoFinder) Phylogenetic Tree(s): OG0000059_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Sro376_g129680.1 | |
| Cluster | HCCA: Cluster_53 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| EOD04043 | No alias | Light harvesting protein [Ensembl]. | 0.15 | OrthoFinder | |
| EOD04179 | No alias | Chlorophyll A-B binding protein [Interproscan]. | 0.14 | OrthoFinder | |
| EOD06381 | No alias | Light harvesting protein [Ensembl]. | 0.13 | OrthoFinder | |
| EOD08888 | No alias | Light harvesting protein [Ensembl]. | 0.11 | OrthoFinder | |
| EOD09088 | No alias | Light harvesting protein [Ensembl]. | 0.15 | OrthoFinder | |
| EOD13767 | No alias | Light harvesting protein [Ensembl]. | 0.14 | OrthoFinder | |
| EOD16168 | No alias | Chlorophyll A-B binding protein [Interproscan]. | 0.07 | OrthoFinder | |
| EOD17483 | No alias | Light harvesting protein [Ensembl]. | 0.07 | OrthoFinder | |
| EOD19212 | No alias | Chlorophyll A-B binding protein [Interproscan]. | 0.04 | OrthoFinder | |
| EOD24357 | No alias | Light harvesting protein [Ensembl]. | 0.07 | OrthoFinder | |
| EOD28786 | No alias | Light harvesting protein [Ensembl]. | 0.07 | OrthoFinder | |
| EOD29856 | No alias | Light harvesting protein [Ensembl]. | 0.04 | OrthoFinder | |
| EOD30102 | No alias | Light harvesting protein [Ensembl]. | 0.07 | OrthoFinder | |
| EOD31146 | No alias | Light harvesting protein [Ensembl]. | 0.11 | OrthoFinder | |
| EOD32547 | No alias | Light harvesting protein [Ensembl]. | 0.08 | OrthoFinder | |
| EOD35505 | No alias | Light harvesting protein [Ensembl]. | 0.12 | OrthoFinder | |
| EOD38673 | No alias | Lught harvesting protein [Ensembl]. | 0.08 | OrthoFinder | |
| EOD41827 | No alias | Light harvesting protein [Ensembl]. | 0.08 | OrthoFinder | |
| PTI_02G00650.1 | No alias | Chlorophyll A-B binding protein [Interproscan]. | 0.18 | OrthoFinder | |
| PTI_02G00660.1 | No alias | Chlorophyll A-B binding protein [Interproscan]. | 0.08 | OrthoFinder | |
| PTI_02G00670.1 | No alias | Chlorophyll A-B binding protein [Interproscan]. | 0.18 | OrthoFinder | |
| PTI_02G00680.1 | No alias | Chlorophyll A-B binding protein [Interproscan]. | 0.19 | OrthoFinder | |
| PTI_03G05650.1 | No alias | Chlorophyll A-B binding protein [Interproscan]. | 0.19 | OrthoFinder | |
| PTI_15G01940.1 | No alias | Chlorophyll A-B binding protein [Interproscan]. | 0.18 | OrthoFinder | |
| PTI_15G03790.1 | No alias | Chlorophyll A-B binding protein [Interproscan]. | 0.19 | OrthoFinder | |
| PTI_17G01330.1 | No alias | Chlorophyll A-B binding protein [Interproscan]. | 0.22 | OrthoFinder | |
| PTI_19G00440.1 | No alias | Chlorophyll A-B binding protein [Interproscan]. | 0.18 | OrthoFinder | |
| PTI_20G01250.1 | No alias | Chlorophyll A-B binding protein [Interproscan]. | 0.17 | OrthoFinder | |
| PTI_24G01550.1 | No alias | Chlorophyll A-B binding protein [Interproscan]. | 0.21 | OrthoFinder | |
| PTI_24G01720.1 | No alias | Chlorophyll A-B binding protein [Interproscan]. | 0.19 | OrthoFinder | |
| PTI_25G01160.1 | No alias | DnaJ domain; Chlorophyll A-B binding protein [Interproscan]. | 0.05 | OrthoFinder | |
| TP01G10180.1 | No alias | Chlorophyll A-B binding protein [Interproscan]. | 0.22 | OrthoFinder | |
| TP02G08060.1 | No alias | Chlorophyll A-B binding protein [Interproscan]. | 0.28 | OrthoFinder | |
| TP03G01950.1 | No alias | Chlorophyll A-B binding protein [Interproscan]. | 0.28 | OrthoFinder | |
| TP03G01960.1 | No alias | Chlorophyll A-B binding protein [Interproscan]. | 0.24 | OrthoFinder | |
| TP05G02100.1 | No alias | Chlorophyll A-B binding protein [Interproscan]. | 0.26 | OrthoFinder | |
| TP20G01530.1 | No alias | Chlorophyll A-B binding protein [Interproscan]. | 0.29 | OrthoFinder | |
| TP20G01560.1 | No alias | Chlorophyll A-B binding protein [Interproscan]. | 0.3 | OrthoFinder | |
| TP22G01060.1 | No alias | Chlorophyll A-B binding protein [Interproscan]. | 0.24 | OrthoFinder | |
| TP22G02570.1 | No alias | Chlorophyll A-B binding protein [Interproscan]. | 0.21 | OrthoFinder |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0004418 | hydroxymethylbilane synthase activity | IEP | Enrichment |
| MF | GO:0004655 | porphobilinogen synthase activity | IEP | Enrichment |
| MF | GO:0004852 | uroporphyrinogen-III synthase activity | IEP | Enrichment |
| BP | GO:0006720 | isoprenoid metabolic process | IEP | Enrichment |
| BP | GO:0006721 | terpenoid metabolic process | IEP | Enrichment |
| BP | GO:0006778 | porphyrin-containing compound metabolic process | IEP | Enrichment |
| BP | GO:0006779 | porphyrin-containing compound biosynthetic process | IEP | Enrichment |
| MF | GO:0008171 | O-methyltransferase activity | IEP | Enrichment |
| BP | GO:0008299 | isoprenoid biosynthetic process | IEP | Enrichment |
| MF | GO:0008661 | 1-deoxy-D-xylulose-5-phosphate synthase activity | IEP | Enrichment |
| MF | GO:0008942 | nitrite reductase [NAD(P)H] activity | IEP | Enrichment |
| CC | GO:0009507 | chloroplast | IEP | Enrichment |
| CC | GO:0009521 | photosystem | IEP | Enrichment |
| CC | GO:0009523 | photosystem II | IEP | Enrichment |
| CC | GO:0009536 | plastid | IEP | Enrichment |
| CC | GO:0009654 | photosystem II oxygen evolving complex | IEP | Enrichment |
| BP | GO:0010109 | regulation of photosynthesis | IEP | Enrichment |
| BP | GO:0010207 | photosystem II assembly | IEP | Enrichment |
| MF | GO:0010242 | oxygen evolving activity | IEP | Enrichment |
| BP | GO:0015979 | photosynthesis | IEP | Enrichment |
| BP | GO:0015994 | chlorophyll metabolic process | IEP | Enrichment |
| BP | GO:0015995 | chlorophyll biosynthetic process | IEP | Enrichment |
| BP | GO:0016114 | terpenoid biosynthetic process | IEP | Enrichment |
| MF | GO:0016661 | oxidoreductase activity, acting on other nitrogenous compounds as donors | IEP | Enrichment |
| MF | GO:0016744 | transketolase or transaldolase activity | IEP | Enrichment |
| MF | GO:0016765 | transferase activity, transferring alkyl or aryl (other than methyl) groups | IEP | Enrichment |
| MF | GO:0016829 | lyase activity | IEP | Enrichment |
| MF | GO:0016835 | carbon-oxygen lyase activity | IEP | Enrichment |
| MF | GO:0016836 | hydro-lyase activity | IEP | Enrichment |
| BP | GO:0019684 | photosynthesis, light reaction | IEP | Enrichment |
| CC | GO:0019898 | extrinsic component of membrane | IEP | Enrichment |
| BP | GO:0033013 | tetrapyrrole metabolic process | IEP | Enrichment |
| BP | GO:0033014 | tetrapyrrole biosynthetic process | IEP | Enrichment |
| BP | GO:0042440 | pigment metabolic process | IEP | Enrichment |
| BP | GO:0042548 | regulation of photosynthesis, light reaction | IEP | Enrichment |
| BP | GO:0042549 | photosystem II stabilization | IEP | Enrichment |
| BP | GO:0043467 | regulation of generation of precursor metabolites and energy | IEP | Enrichment |
| BP | GO:0046148 | pigment biosynthetic process | IEP | Enrichment |
| MF | GO:0046406 | magnesium protoporphyrin IX methyltransferase activity | IEP | Enrichment |
| MF | GO:0046422 | violaxanthin de-epoxidase activity | IEP | Enrichment |
| MF | GO:0046857 | oxidoreductase activity, acting on other nitrogenous compounds as donors, with NAD or NADP as acceptor | IEP | Enrichment |
| MF | GO:0051537 | 2 iron, 2 sulfur cluster binding | IEP | Enrichment |
| CC | GO:0098796 | membrane protein complex | IEP | Enrichment |
| MF | GO:0098809 | nitrite reductase activity | IEP | Enrichment |
| BP | GO:1901566 | organonitrogen compound biosynthetic process | IEP | Enrichment |
| CC | GO:1902494 | catalytic complex | IEP | Enrichment |
| CC | GO:1990204 | oxidoreductase complex | IEP | Enrichment |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR022796 | Chloroa_b-bind | 38 | 189 |
| No external refs found! |