Sro376_g129680.1 (Contig3640.g28118)


Aliases : Contig3640.g28118

Description : Fucoxanthin-chlorophyll a-c binding protein


Gene families : OG_01_0000059 (OrthoFinder) Phylogenetic Tree(s): OG0000059_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro376_g129680.1
Cluster HCCA: Cluster_53

Target Alias Description ECC score Gene Family Method Actions
EOD04043 No alias Light harvesting protein [Ensembl]. 0.15 OrthoFinder
EOD04179 No alias Chlorophyll A-B binding protein [Interproscan]. 0.14 OrthoFinder
EOD06381 No alias Light harvesting protein [Ensembl]. 0.13 OrthoFinder
EOD08888 No alias Light harvesting protein [Ensembl]. 0.11 OrthoFinder
EOD09088 No alias Light harvesting protein [Ensembl]. 0.15 OrthoFinder
EOD13767 No alias Light harvesting protein [Ensembl]. 0.14 OrthoFinder
EOD16168 No alias Chlorophyll A-B binding protein [Interproscan]. 0.07 OrthoFinder
EOD17483 No alias Light harvesting protein [Ensembl]. 0.07 OrthoFinder
EOD19212 No alias Chlorophyll A-B binding protein [Interproscan]. 0.04 OrthoFinder
EOD24357 No alias Light harvesting protein [Ensembl]. 0.07 OrthoFinder
EOD28786 No alias Light harvesting protein [Ensembl]. 0.07 OrthoFinder
EOD29856 No alias Light harvesting protein [Ensembl]. 0.04 OrthoFinder
EOD30102 No alias Light harvesting protein [Ensembl]. 0.07 OrthoFinder
EOD31146 No alias Light harvesting protein [Ensembl]. 0.11 OrthoFinder
EOD32547 No alias Light harvesting protein [Ensembl]. 0.08 OrthoFinder
EOD35505 No alias Light harvesting protein [Ensembl]. 0.12 OrthoFinder
EOD38673 No alias Lught harvesting protein [Ensembl]. 0.08 OrthoFinder
EOD41827 No alias Light harvesting protein [Ensembl]. 0.08 OrthoFinder
PTI_02G00650.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.18 OrthoFinder
PTI_02G00660.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.08 OrthoFinder
PTI_02G00670.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.18 OrthoFinder
PTI_02G00680.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.19 OrthoFinder
PTI_03G05650.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.19 OrthoFinder
PTI_15G01940.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.18 OrthoFinder
PTI_15G03790.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.19 OrthoFinder
PTI_17G01330.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.22 OrthoFinder
PTI_19G00440.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.18 OrthoFinder
PTI_20G01250.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.17 OrthoFinder
PTI_24G01550.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.21 OrthoFinder
PTI_24G01720.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.19 OrthoFinder
PTI_25G01160.1 No alias DnaJ domain; Chlorophyll A-B binding protein [Interproscan]. 0.05 OrthoFinder
TP01G10180.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.22 OrthoFinder
TP02G08060.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.28 OrthoFinder
TP03G01950.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.28 OrthoFinder
TP03G01960.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.24 OrthoFinder
TP05G02100.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.26 OrthoFinder
TP20G01530.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.29 OrthoFinder
TP20G01560.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.3 OrthoFinder
TP22G01060.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.24 OrthoFinder
TP22G02570.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.21 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0004418 hydroxymethylbilane synthase activity IEP Enrichment
MF GO:0004655 porphobilinogen synthase activity IEP Enrichment
MF GO:0004852 uroporphyrinogen-III synthase activity IEP Enrichment
BP GO:0006720 isoprenoid metabolic process IEP Enrichment
BP GO:0006721 terpenoid metabolic process IEP Enrichment
BP GO:0006778 porphyrin-containing compound metabolic process IEP Enrichment
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP Enrichment
MF GO:0008171 O-methyltransferase activity IEP Enrichment
BP GO:0008299 isoprenoid biosynthetic process IEP Enrichment
MF GO:0008661 1-deoxy-D-xylulose-5-phosphate synthase activity IEP Enrichment
MF GO:0008942 nitrite reductase [NAD(P)H] activity IEP Enrichment
CC GO:0009507 chloroplast IEP Enrichment
CC GO:0009521 photosystem IEP Enrichment
CC GO:0009523 photosystem II IEP Enrichment
CC GO:0009536 plastid IEP Enrichment
CC GO:0009654 photosystem II oxygen evolving complex IEP Enrichment
BP GO:0010109 regulation of photosynthesis IEP Enrichment
BP GO:0010207 photosystem II assembly IEP Enrichment
MF GO:0010242 oxygen evolving activity IEP Enrichment
BP GO:0015979 photosynthesis IEP Enrichment
BP GO:0015994 chlorophyll metabolic process IEP Enrichment
BP GO:0015995 chlorophyll biosynthetic process IEP Enrichment
BP GO:0016114 terpenoid biosynthetic process IEP Enrichment
MF GO:0016661 oxidoreductase activity, acting on other nitrogenous compounds as donors IEP Enrichment
MF GO:0016744 transketolase or transaldolase activity IEP Enrichment
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP Enrichment
MF GO:0016829 lyase activity IEP Enrichment
MF GO:0016835 carbon-oxygen lyase activity IEP Enrichment
MF GO:0016836 hydro-lyase activity IEP Enrichment
BP GO:0019684 photosynthesis, light reaction IEP Enrichment
CC GO:0019898 extrinsic component of membrane IEP Enrichment
BP GO:0033013 tetrapyrrole metabolic process IEP Enrichment
BP GO:0033014 tetrapyrrole biosynthetic process IEP Enrichment
BP GO:0042440 pigment metabolic process IEP Enrichment
BP GO:0042548 regulation of photosynthesis, light reaction IEP Enrichment
BP GO:0042549 photosystem II stabilization IEP Enrichment
BP GO:0043467 regulation of generation of precursor metabolites and energy IEP Enrichment
BP GO:0046148 pigment biosynthetic process IEP Enrichment
MF GO:0046406 magnesium protoporphyrin IX methyltransferase activity IEP Enrichment
MF GO:0046422 violaxanthin de-epoxidase activity IEP Enrichment
MF GO:0046857 oxidoreductase activity, acting on other nitrogenous compounds as donors, with NAD or NADP as acceptor IEP Enrichment
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP Enrichment
CC GO:0098796 membrane protein complex IEP Enrichment
MF GO:0098809 nitrite reductase activity IEP Enrichment
BP GO:1901566 organonitrogen compound biosynthetic process IEP Enrichment
CC GO:1902494 catalytic complex IEP Enrichment
CC GO:1990204 oxidoreductase complex IEP Enrichment
InterPro domains Description Start Stop
IPR022796 Chloroa_b-bind 38 189
No external refs found!