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  5. Sro373_g129120.1

Sro373_g129120.1 (Contig1347.g12397)


Aliases : Contig1347.g12397

Description : Histone H3


Gene families : OG_01_0000015 (OrthoFinder) Phylogenetic Tree(s): OG0000015_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro373_g129120.1
Cluster HCCA: Cluster_146

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000970.26 tig00000970_g5845.t1 Chromatin organisation.histones.H3-type histone 0.02 OrthoFinder
Cre03.g197050 30786769, HTV2 Histone H3.2 OS=Lilium longiflorum 0.02 OrthoFinder
Dusal.0107s00008.1 33192141 Histone H2A/H2B/H3 [Interproscan]. 0.01 OrthoFinder

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Enrichment
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Enrichment
BP GO:0000398 mRNA splicing, via spliceosome IEP Enrichment
CC GO:0000813 ESCRT I complex IEP Enrichment
MF GO:0004843 thiol-dependent deubiquitinase IEP Enrichment
BP GO:0006397 mRNA processing IEP Enrichment
BP GO:0006810 transport IEP Enrichment
BP GO:0007034 vacuolar transport IEP Enrichment
MF GO:0008242 omega peptidase activity IEP Enrichment
BP GO:0008380 RNA splicing IEP Enrichment
BP GO:0016071 mRNA metabolic process IEP Enrichment
BP GO:0016192 vesicle-mediated transport IEP Enrichment
BP GO:0016197 endosomal transport IEP Enrichment
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Enrichment
BP GO:0032509 endosome transport via multivesicular body sorting pathway IEP Enrichment
BP GO:0034622 cellular protein-containing complex assembly IEP Enrichment
CC GO:0036452 ESCRT complex IEP Enrichment
BP GO:0043248 proteasome assembly IEP Enrichment
BP GO:0051179 localization IEP Enrichment
BP GO:0051234 establishment of localization IEP Enrichment
MF GO:0070403 NAD+ binding IEP Enrichment
BP GO:0071985 multivesicular body sorting pathway IEP Enrichment
MF GO:0101005 deubiquitinase activity IEP Enrichment
MF GO:1990380 Lys48-specific deubiquitinase activity IEP Enrichment
InterPro domains Description Start Stop
IPR007125 Histone_H2A/H2B/H3 1 132
No external refs found!